JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RRP12_chr10_97351701_97406340	0/0	a0012	1297	1	0	0	0	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0013	1297	1	0	0	0	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0014	1297	1	0	1	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0015	1297	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP15_chr1_218280293_218342983	1/1	a0001	282	319	70	59	148	16	24	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0002	282	18	1	0	16	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0003	282	12	10	2	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0004	282	5	4	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0005	282	2	0	0	2	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0006	282	1	0	0	0	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0007	282	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0008	282	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	a0009	282	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP1B_chr21_43654560_43701079	0/0	a0001	758	257	65	50	119	5	18	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	1/1	a0002	758	81	0	24	34	5	16	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0003	758	22	21	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0004	758	5	4	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0005	758	2	0	0	2	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0006	758	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0007	758	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0008	758	1	0	0	0	0	1	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0009	758	1	0	0	0	0	1	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	a0010	758	1	0	0	1	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1_chr21_43784577_43810293	1/1	a0001	461	268	53	53	120	12	28	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0002	461	101	32	24	31	2	12	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0003	461	10	8	2	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0004	461	6	0	0	5	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0005	461	3	2	1	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0006	461	2	0	0	2	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0007	461	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0008	461	1	0	0	0	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0009	461	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	a0010	461	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP36_chr6_43016623_43034599	1/0	a0001	259	165	27	44	67	12	14	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/1	a0002	257	140	55	17	51	2	14	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0003	253	11	1	8	2	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0004	259	5	3	0	1	0	1	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0005	257	4	4	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0006	259	2	0	1	0	0	1	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0007	257	2	0	0	0	0	2	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0008	259	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0009	257	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0010	257	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0011	255	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	a0012	255	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP7A_chr22_42503344_42524796	1/1	a0001	280	213	56	52	58	13	32	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0002	280	122	3	4	107	0	8	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0003	280	22	6	12	0	3	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0004	280	13	12	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0005	280	11	3	7	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796