JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RSL1D1_chr16_11828850_11856542	0/0	a0002	490	5	0	0	5	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0003	490	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0004	490	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0005	490	2	0	2	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0006	490	2	0	0	2	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0007	490	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0008	490	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0009	490	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	a0010	490	1	0	0	0	1	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL24D1_chr15_55175806_55201941	1/1	a0001	163	326	96	48	128	16	36	copy fasta	RSL24D1	chr15	55175806	55201941
RSPH10B2_chr7_6749103_6803765	0/0	a0000	0	2	2	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0001	870	35	9	9	14	1	2	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0002	870	31	5	4	12	0	10	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0003	870	13	1	3	4	1	4	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0004	870	13	3	3	4	0	3	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0005	870	4	2	1	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0006	870	2	0	0	0	0	2	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0007	870	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0008	870	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0009	870	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0010	870	1	0	0	0	0	1	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0011	870	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0012	870	1	0	0	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0013	870	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	a0014	870	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B_chr7_5921136_5975689	0/0	a0001	870	20	5	5	10	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0002	870	11	3	2	1	4	1	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0003	870	9	1	5	1	2	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0004	870	9	5	1	1	1	1	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0005	870	9	3	2	2	2	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0006	870	5	1	4	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0007	870	2	2	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0008	870	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0009	870	1	0	0	0	1	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0010	870	1	0	0	1	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0011	870	1	0	1	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	a0012	542	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH14_chr22_23054415_23146990	1/1	a0001	348	282	73	54	111	13	29	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0002	348	14	3	2	2	1	6	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0003	348	7	7	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0004	348	4	3	1	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0005	348	3	3	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0006	348	1	0	0	0	0	1	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0007	348	1	0	1	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0008	348	1	0	0	1	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	a0009	348	1	1	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH1_chr21_42467486_42501224	1/1	a0001	309	374	84	64	174	13	37	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0002	309	21	1	8	2	4	6	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0003	309	3	0	3	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0004	309	3	3	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224