JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RSPH1_chr21_42467486_42501224	0/0	a0005	309	2	0	1	0	1	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0006	309	1	1	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0007	309	1	0	0	0	0	1	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0008	309	1	0	0	1	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0009	309	1	0	0	1	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	a0010	309	1	1	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH3_chr6_158967871_159005202	1/1	a0001	418	167	35	38	76	2	14	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0002	418	80	8	9	56	1	6	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0003	418	17	11	4	0	1	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0004	418	14	14	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0005	418	6	6	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0006	418	5	2	2	0	0	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0007	418	3	0	3	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0008	418	2	0	0	0	0	2	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0009	418	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0010	418	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0011	418	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0012	418	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0013	418	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0014	418	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0015	418	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	a0016	418	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH4A_chr6_116611479_116637985	0/1	a0001	716	125	51	10	47	4	12	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	1/0	a0002	716	106	2	25	64	6	8	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0003	716	95	6	12	61	7	9	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0004	716	50	20	12	6	0	12	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0005	716	12	11	1	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0006	716	3	0	3	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0007	716	3	0	3	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0008	716	1	0	0	0	1	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0009	716	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0010	716	1	0	0	0	0	1	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	a0011	716	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH6A_chr19_45790713_45820308	1/1	a0001	717	262	65	55	92	16	32	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0002	723	129	12	12	96	2	7	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0003	717	13	0	10	3	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0004	723	4	0	0	4	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0005	720	4	4	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0006	717	3	3	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0007	717	1	0	1	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0008	717	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0009	722	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0010	722	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0011	723	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0012	723	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0013	717	1	0	0	0	0	1	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0014	717	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	a0015	723	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH9_chr6_43640036_43677600	1/1	a0001	276	260	85	49	88	11	25	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	a0002	276	71	3	4	50	3	11	copy fasta	RSPH9	chr6	43640036	43677600