JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RSPH9_chr6_43640036_43677600	0/0	a0003	276	6	6	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	a0004	276	3	0	0	3	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	a0005	276	1	0	0	1	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	a0006	276	1	0	1	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPO1_chr1_37606350_37639892	1/1	a0001	263	387	94	65	174	14	38	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	a0002	263	29	0	4	18	2	5	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	a0003	264	3	2	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	a0004	263	1	0	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	a0005	263	1	0	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	a0006	263	1	0	0	0	0	1	copy fasta	RSPO1	chr1	37606350	37639892
RSPO2_chr8_107894316_108088620	1/1	a0001	243	144	63	19	40	0	20	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	a0002	243	95	2	31	40	8	14	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	a0003	243	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO3_chr6_127113671_127204481	1/1	a0001	272	309	83	60	128	12	24	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	a0002	272	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO4_chr20_953452_1007311	1/1	a0001	234	354	84	51	169	12	36	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0002	234	13	13	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0003	234	4	1	3	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0004	234	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0005	234	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0006	234	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0007	234	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	a0008	234	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPRY1_chr16_57181329_57245469	1/1	a0001	576	355	85	62	160	14	32	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	a0002	576	3	3	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSRC1_chr3_158105089_158550730	1/1	a0001	334	271	75	47	105	12	30	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	a0002	334	2	0	2	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	a0003	334	1	0	1	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	a0004	334	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	a0005	334	1	1	0	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC2_chr12_122498454_122531936	1/1	a0001	434	381	82	68	169	16	44	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	a0002	434	1	0	0	1	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRP1_chr1_25237249_25252454	1/0	a0001	290	302	89	47	121	13	31	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/1	a0002	290	35	1	19	3	4	7	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	a0003	290	5	0	2	0	1	2	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	a0004	290	2	0	0	0	0	2	copy fasta	RSRP1	chr1	25237249	25252454
RSU1_chr10_16585611_16822424	1/1	a0001	277	187	88	34	47	6	10	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	a0002	277	3	0	0	3	0	0	copy fasta	RSU1	chr10	16585611	16822424
RTBDN_chr19_12820482_12839579	1/0	a0001	229	397	81	66	195	15	39	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/1	a0002	229	28	14	5	7	1	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	a0003	229	2	0	0	0	0	2	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	a0004	229	1	0	1	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	a0005	229	1	1	0	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	a0006	229	1	0	0	0	0	1	copy fasta	RTBDN	chr19	12820482	12839579
RTCA_chr1_100261216_100297769	1/1	a0001	366	291	85	51	111	12	30	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	a0002	366	3	3	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	a0003	366	1	0	0	1	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	a0004	366	1	0	1	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCB_chr22_32382582_32417247	1/1	a0001	505	436	94	79	197	14	50	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	a0002	505	1	0	0	1	0	0	copy fasta	RTCB	chr22	32382582	32417247