JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RTCB_chr22_32382582_32417247	0/0	a0003	505	1	0	1	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTEL1_chr20_63653312_63701245	0/0	a0001	1300	44	27	10	1	3	3	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	1/0	a0002	1300	4	0	0	1	1	1	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0003	1300	2	2	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0004	1300	2	2	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0005	1300	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0006	795	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0007	1300	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0008	1300	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0009	1300	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0010	1300	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	a0011	1300	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/1	a0012	1300	1	0	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTF1_chr15_41412095_41488563	1/1	a0001	710	225	54	48	73	14	34	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	a0002	710	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF2_chr20_56463627_56524449	0/1	a0001	306	348	77	59	173	8	30	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	1/0	a0002	306	39	11	9	3	6	9	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	a0003	306	1	0	0	0	0	1	copy fasta	RTF2	chr20	56463627	56524449
RTKN2_chr10_62188086_62273844	0/0	a0001	609	114	26	20	45	5	18	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	1/0	a0002	609	52	32	11	3	0	5	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/1	a0003	607	42	27	6	3	2	3	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0004	609	30	1	2	18	1	8	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0005	609	12	1	2	7	2	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0006	607	7	6	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0007	609	2	0	0	2	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0008	609	1	0	0	1	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0009	607	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	a0010	609	1	0	0	1	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN_chr2_74420835_74446937	1/1	a0001	563	373	93	66	170	14	28	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0002	563	2	0	0	2	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0003	563	1	0	0	0	0	1	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0004	563	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0005	563	1	0	0	1	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0006	563	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0007	563	1	0	0	0	0	1	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0008	563	1	0	0	1	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	a0009	563	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTL10_chr22_19841146_19859874	1/1	a0001	364	384	85	62	176	16	43	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0002	364	13	0	3	9	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0003	364	10	3	5	0	2	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0004	364	4	2	2	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0005	89	3	0	0	3	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0006	364	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0007	364	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0008	364	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	a0009	364	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL1_chr14_100874753_100908722	1/0	a0001	1358	228	65	42	85	6	29	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/1	a0002	1358	95	13	7	66	2	6	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0003	1359	43	4	18	5	8	8	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0004	1358	17	0	0	17	0	0	copy fasta	RTL1	chr14	100874753	100908722