JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP13A5_chr3_193269789_193383753	0/0	a0031	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0032	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0033	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0034	1218	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP1A1_chr1_116368244_116409774	1/1	a0001	1023	335	96	53	142	12	30	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	a0002	1023	1	0	1	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A2_chr1_160110759_160148591	1/1	a0001	1020	412	94	72	189	14	41	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	a0002	1020	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	a0003	1020	1	0	0	0	0	1	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A3_chr19_41961582_41999230	1/1	a0001	1013	282	66	52	108	8	46	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A4_chr1_160146603_160191980	0/0	a0001	1029	210	48	48	86	5	23	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	1/1	a0002	1029	128	30	26	49	7	14	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0003	1029	21	0	0	20	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0004	1029	10	0	1	9	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0005	1029	10	0	5	0	2	3	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0006	1029	5	5	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0007	1029	4	0	0	4	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0008	1029	3	3	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0009	1029	3	3	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0010	1029	2	0	0	0	0	2	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0011	1029	2	0	0	2	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0012	1029	2	2	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0013	1029	2	0	1	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0014	1029	2	0	0	2	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0015	1029	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0016	1029	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0017	1029	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0018	1029	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0019	1029	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0020	1029	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0021	1029	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0022	1029	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0023	1029	1	0	1	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0024	1029	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0025	1029	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0026	1029	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0027	1029	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	a0028	1029	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1B1_chr1_169101690_169137719	1/1	a0001	303	412	92	76	180	18	44	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B2_chr17_7645926_7662770	1/1	a0001	290	432	88	85	197	16	44	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	a0002	290	5	5	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	a0003	290	1	0	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	a0004	290	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	a0005	290	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B3_chr3_141871643_141931549	1/1	a0001	279	408	92	62	192	16	44	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B4_chrX_120357089_120388237	1/1	a0001	357	304	74	62	124	11	31	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	a0002	357	40	0	1	39	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	a0003	357	4	0	0	0	1	3	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	a0004	161	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	a0005	196	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237