JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RTN4_chr2_54967189_55055451	0/0	a0012	1192	1	0	0	0	0	1	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0013	1192	1	0	0	1	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0014	1192	1	0	0	1	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0015	1192	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0016	1192	1	0	0	0	1	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0017	1192	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTP1_chr3_187192486_187206462	1/1	a0001	263	251	39	31	142	10	27	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0002	263	169	48	42	55	8	16	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0003	263	14	11	3	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0004	263	4	0	0	4	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0005	263	3	0	0	0	0	3	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0006	263	2	0	0	0	0	2	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0007	263	1	0	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0008	263	1	0	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	a0009	263	1	0	0	1	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP2_chr3_187693259_187707557	0/0	a0001	225	187	4	37	105	9	32	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	1/0	a0002	225	153	74	25	46	4	3	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/1	a0003	225	62	11	12	28	5	5	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	a0004	225	7	1	0	4	0	2	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	a0005	225	6	5	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	a0006	225	3	3	0	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	a0007	225	2	0	0	2	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	a0008	225	1	0	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	a0009	225	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP3_chr3_46492976_46505950	1/1	a0001	232	425	96	72	199	12	44	copy fasta	RTP3	chr3	46492976	46505950
RTP3_chr3_46492976_46505950	0/0	a0002	232	1	0	0	1	0	0	copy fasta	RTP3	chr3	46492976	46505950
RTP4_chr3_187363385_187377076	0/0	a0001	246	136	5	30	81	7	13	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	a0002	246	94	24	15	40	3	12	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	1/0	a0003	246	76	41	11	12	5	6	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	a0004	246	74	14	19	26	3	12	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	a0005	246	72	10	3	57	0	2	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	a0006	246	2	0	1	0	0	1	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	a0007	246	1	0	1	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/1	a0008	246	1	0	0	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP5_chr2_241864729_241878823	0/0	a0001	572	113	49	21	25	4	14	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0002	572	88	0	18	67	0	3	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/1	a0003	572	82	10	20	26	7	18	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0004	572	31	7	3	19	1	1	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0005	572	13	12	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0006	572	6	6	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0007	572	4	3	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0008	572	4	3	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0009	572	3	0	0	3	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0010	572	3	0	0	3	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0011	572	2	0	0	2	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0012	572	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0013	572	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0014	572	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0015	572	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0016	572	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823