JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RTP5_chr2_241864729_241878823	0/0	a0017	572	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0018	572	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0019	572	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0020	572	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0021	572	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0022	572	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0023	572	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0024	572	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	a0025	565	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTRAF_chr14_51984546_52015694	1/1	a0001	244	434	94	83	195	18	42	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	a0002	210	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	a0003	244	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTTN_chr18_69998031_70210687	0/1	a0001	2227	59	11	22	10	2	13	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0002	2227	30	25	2	0	1	2	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	1/0	a0003	2226	20	17	2	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0004	2227	11	11	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0005	2227	9	2	2	1	0	4	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0006	2227	6	6	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0007	2227	4	3	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0008	2227	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0009	2227	2	0	1	0	1	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0010	2227	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0011	2227	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0012	2227	1	0	0	0	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0013	2227	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0014	2227	1	0	0	1	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0015	2227	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0016	2227	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0017	2227	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0018	2227	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0019	2227	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	a0020	2227	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RUBCNL_chr13_46329681_46392252	0/0	a0001	662	177	31	26	98	5	17	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	1/1	a0002	662	154	37	30	65	5	15	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0003	662	7	6	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0004	662	6	5	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0005	662	3	0	0	0	0	3	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0006	662	3	3	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0007	662	2	1	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0008	662	2	0	1	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0009	662	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	a0010	662	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCN_chr3_197663867_197741904	1/0	a0001	972	130	47	28	27	8	19	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0002	972	14	13	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0003	972	12	1	0	7	0	4	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/1	a0004	972	10	8	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0005	972	9	8	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0006	972	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0007	972	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0008	972	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904