JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RUBCN_chr3_197663867_197741904	0/0	a0009	972	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0010	972	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0011	972	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0012	972	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0013	972	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	a0014	972	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUFY1_chr5_179545554_179615012	1/1	a0001	708	369	92	71	145	14	45	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	a0002	708	2	2	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	a0003	708	1	0	0	0	0	1	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	a0004	708	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	a0005	708	1	0	0	1	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	a0006	708	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	a0007	704	1	0	1	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY2_chr10_68338408_68412277	1/1	a0001	606	272	83	44	91	10	42	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	a0002	606	3	0	0	3	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	a0003	606	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY3_chr4_70716964_70813619	1/1	a0001	620	250	76	30	101	10	31	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	a0002	620	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	a0003	620	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	a0004	620	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	a0005	620	1	0	0	1	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY4_chr2_218064253_218095584	1/1	a0001	571	349	53	68	164	14	48	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0002	571	11	10	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0003	571	10	10	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0004	571	6	6	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0005	571	4	0	3	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0006	571	3	3	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0007	571	2	0	2	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0008	571	1	0	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0009	571	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0010	571	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0011	571	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0012	571	1	0	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0013	571	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0014	571	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0015	571	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	a0016	571	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUNDC1_chr17_42975565_43000142	0/1	a0001	613	299	58	67	118	14	41	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	1/0	a0002	613	15	11	3	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	a0003	613	15	15	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	a0004	613	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	a0005	613	1	0	0	0	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	a0006	613	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC3A_chr17_44303601_44323670	1/1	a0001	446	409	88	72	187	18	42	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	a0002	446	1	0	1	0	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	a0003	446	1	0	0	1	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	a0004	446	1	0	1	0	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3B_chr7_87623398_87837296	1/1	a0001	456	199	62	42	65	8	20	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	a0002	456	3	0	0	3	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNX1T1_chr8_91949972_92108385	1/1	a0001	604	132	84	20	4	6	16	copy fasta	RUNX1T1	chr8	91949972	92108385