JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RUNX1_chr21_34782801_35054302	1/1	a0001	480	168	66	47	28	4	21	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	a0002	480	1	0	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	a0003	480	1	0	0	0	0	1	copy fasta	RUNX1	chr21	34782801	35054302
RUNX2_chr6_45323330_45556082	1/1	a0001	521	174	74	33	42	7	16	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	a0002	515	2	0	2	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	a0003	521	1	0	0	0	1	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	a0004	521	1	0	1	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX3_chr1_24894511_24935276	1/1	a0001	415	386	98	74	156	16	40	copy fasta	RUNX3	chr1	24894511	24935276
RUSC1_chr1_155315894_155336114	1/1	a0001	902	299	85	59	102	12	39	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0002	902	7	5	1	0	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0003	902	3	2	1	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0004	902	3	0	0	2	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0005	902	2	2	0	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0006	902	1	0	1	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0007	902	1	0	0	1	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0008	902	1	0	0	0	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	a0009	902	1	0	0	1	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC2_chr9_35485111_35566895	0/1	a0001	1516	302	50	66	136	10	39	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	a0002	1516	8	8	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	1/0	a0003	1516	5	3	1	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	a0004	1516	2	0	0	2	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	a0005	1516	2	2	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	a0006	1516	1	0	1	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	a0007	1516	1	0	0	0	0	1	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	a0008	1516	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSF1_chr16_31484475_31513391	1/1	a0001	468	362	78	56	170	16	40	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0002	468	4	4	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0003	468	4	4	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0004	468	3	3	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0005	468	2	2	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0006	468	1	0	0	1	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0007	468	1	0	0	1	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	a0008	468	1	1	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUVBL1_chr3_128075810_128128812	1/1	a0001	456	360	88	68	158	14	30	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL2_chr19_48988887_49020970	1/1	a0001	463	411	94	76	174	16	49	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	a0002	463	1	0	0	0	0	1	copy fasta	RUVBL2	chr19	48988887	49020970
RWDD1_chr6_116566504_116602675	1/1	a0001	243	377	88	56	171	18	42	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	a0002	243	1	0	0	1	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD2A_chr6_83188357_83203935	1/1	a0001	292	431	97	78	194	14	46	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	a0002	292	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2B_chr21_28999384_29024349	1/1	a0001	319	425	92	82	188	14	47	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	a0002	319	10	0	0	10	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	a0003	319	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	a0004	319	1	0	0	0	0	1	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	a0005	319	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD3_chr1_95229210_95252225	0/1	a0001	267	330	59	61	163	11	35	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	a0002	267	91	25	17	43	3	3	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	1/0	a0003	267	7	6	0	0	0	0	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	a0004	267	2	0	2	0	0	0	copy fasta	RWDD3	chr1	95229210	95252225
RWDD4_chr4_183634635_183664185	1/0	a0001	188	379	80	60	191	13	34	copy fasta	RWDD4	chr4	183634635	183664185