JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RWDD4_chr4_183634635_183664185	0/1	a0002	188	101	20	22	39	3	16	copy fasta	RWDD4	chr4	183634635	183664185
RXFP1_chr4_158516882_158658372	1/1	a0001	757	202	81	41	47	10	21	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	a0002	757	3	0	0	0	0	3	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	a0003	757	2	2	0	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	a0004	757	1	0	0	1	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	a0005	757	1	0	1	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	a0006	757	1	1	0	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP2_chr13_31734526_31808389	1/1	a0001	754	325	81	48	152	6	36	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0002	754	52	6	8	36	2	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0003	754	3	3	0	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0004	754	1	0	0	1	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0005	754	1	0	0	0	0	1	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0006	754	1	0	0	0	0	1	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0007	754	1	0	1	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0008	754	1	0	0	1	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	a0009	754	1	0	1	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP3_chr5_33931386_33943918	0/1	a0001	469	438	95	71	215	10	46	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	a0002	469	3	0	0	3	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	a0003	469	2	0	0	2	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	a0004	469	1	1	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	a0005	469	1	0	1	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP4_chr1_155936638_155948087	0/1	a0001	374	267	65	45	115	12	29	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	1/0	a0002	374	26	22	0	1	0	2	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	a0003	374	18	1	0	14	0	3	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	a0004	374	1	0	1	0	0	0	copy fasta	RXFP4	chr1	155936638	155948087
RXRA_chr9_134321455_134445585	1/1	a0001	462	232	84	54	58	8	26	copy fasta	RXRA	chr9	134321455	134445585
RXRB_chr6_33188588_33205665	0/1	a0001	533	386	92	76	155	16	46	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	a0002	533	4	2	0	1	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	a0003	533	1	0	0	0	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRG_chr1_165395922_165450126	1/1	a0001	463	411	96	73	180	14	46	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	a0002	463	1	0	1	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXYLT1_chr12_63774909_63814562	1/1	a0001	443	349	70	59	177	10	31	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	a0002	443	13	1	4	3	2	3	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	a0003	443	4	4	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	a0004	443	3	3	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	a0005	443	1	0	0	1	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	a0006	443	1	0	0	1	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	a0007	443	1	0	1	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RYK_chr3_134152133_134255859	1/0	a0001	607	248	71	46	90	9	31	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/1	a0002	607	112	10	17	77	3	4	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0003	607	3	0	0	3	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0004	609	3	3	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0005	607	2	2	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0006	607	1	0	0	1	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0007	607	1	0	0	1	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0008	607	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0009	607	1	0	0	0	0	1	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0010	607	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0011	607	1	0	1	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	a0012	607	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859