JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RYR3_chr15_33305967_33871102	0/0	a0009	4870	3	3	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	1/0	a0010	4870	3	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0011	4869	3	0	2	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0012	4870	2	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0013	4869	2	0	1	0	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0014	4870	2	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0015	4870	2	0	2	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0016	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0017	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0018	4869	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0019	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0020	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0021	4870	1	0	0	0	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0022	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0023	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0024	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0025	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0026	4870	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0027	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0028	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0029	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0030	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0031	4870	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0032	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0033	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0034	4870	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0035	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0036	4870	1	0	0	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0037	4870	1	0	0	0	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0038	4870	1	0	0	0	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0039	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0040	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0041	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0042	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0043	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0044	4870	1	0	0	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0045	4869	1	0	0	0	1	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0046	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0047	4870	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0048	4870	1	0	0	0	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0049	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0050	4869	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0051	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0052	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0053	4870	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
S100A10_chr1_151977915_151998859	1/1	a0001	97	390	92	70	168	16	42	copy fasta	S100A10	chr1	151977915	151998859
S100A11_chr1_152027506_152042004	1/1	a0001	105	360	89	70	137	16	46	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	a0002	105	1	0	0	1	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	a0003	105	1	1	0	0	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A12_chr1_153368711_153380621	1/1	a0001	92	366	88	80	152	12	32	copy fasta	S100A12	chr1	153368711	153380621