JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
S100A13_chr1_153613799_153632505	1/1	a0001	98	371	96	63	148	14	48	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	a0002	98	2	0	2	0	0	0	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	a0003	98	1	0	1	0	0	0	copy fasta	S100A13	chr1	153613799	153632505
S100A14_chr1_153609255_153621325	1/1	a0001	104	394	94	70	166	14	48	copy fasta	S100A14	chr1	153609255	153621325
S100A16_chr1_153601886_153618137	1/1	a0001	103	396	96	72	166	12	48	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	a0002	103	3	0	0	3	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	a0003	103	1	0	0	1	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A1_chr1_153623434_153637039	1/1	a0001	94	376	94	70	153	14	43	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	0/0	a0002	94	1	0	0	0	0	1	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	0/0	a0003	94	1	0	0	1	0	0	copy fasta	S100A1	chr1	153623434	153637039
S100A2_chr1_153556108_153570844	1/1	a0001	98	311	41	72	138	14	44	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	a0002	98	55	47	2	2	0	4	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	a0003	98	4	0	4	0	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A3_chr1_153542329_153554258	1/1	a0001	101	253	54	54	94	16	33	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	a0002	101	45	34	4	2	0	5	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	a0003	101	4	4	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	a0004	101	1	1	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	a0005	101	1	1	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	a0006	101	1	0	1	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	a0007	101	1	0	1	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A4_chr1_153538621_153550806	1/1	a0001	101	350	94	70	132	16	36	copy fasta	S100A4	chr1	153538621	153550806
S100A5_chr1_153532147_153545934	1/1	a0001	92	310	83	59	113	18	35	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	a0002	92	56	0	10	43	0	3	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	a0003	92	11	10	1	0	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	a0004	92	1	1	0	0	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A6_chr1_153529599_153540991	1/1	a0001	90	378	93	66	166	12	39	copy fasta	S100A6	chr1	153529599	153540991
S100A6_chr1_153529599_153540991	0/0	a0002	90	1	1	0	0	0	0	copy fasta	S100A6	chr1	153529599	153540991
S100A6_chr1_153529599_153540991	0/0	a0003	90	1	0	0	0	0	1	copy fasta	S100A6	chr1	153529599	153540991
S100A7A_chr1_153411520_153428222	1/1	a0001	101	305	48	58	147	9	41	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0002	101	88	46	12	27	1	2	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0003	101	16	0	9	7	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0004	101	4	0	0	4	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0005	101	2	0	2	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0006	101	2	0	1	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0007	101	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0008	101	1	0	0	0	0	1	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0009	101	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0010	101	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	a0011	101	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7_chr1_153452744_153465651	0/1	a0001	101	412	93	78	192	14	34	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	a0002	101	3	0	0	3	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	1/0	a0003	101	3	0	0	0	0	2	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	a0004	101	1	1	0	0	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	a0005	101	1	0	0	1	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A8_chr1_153385032_153396073	1/1	a0001	93	321	88	70	109	14	38	copy fasta	S100A8	chr1	153385032	153396073
S100A8_chr1_153385032_153396073	0/0	a0002	93	1	0	0	1	0	0	copy fasta	S100A8	chr1	153385032	153396073
S100A9_chr1_153352854_153366023	1/1	a0001	114	455	95	84	208	18	48	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	a0002	114	4	0	0	4	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	a0003	114	3	3	0	0	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100B_chr21_46593604_46610082	1/1	a0001	92	452	94	80	210	18	48	copy fasta	S100B	chr21	46593604	46610082