JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP1B4_chrX_120357089_120388237	0/0	a0006	355	1	0	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	a0007	357	1	0	0	0	1	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	a0008	29	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP23_chr12_57936567_57964148	0/1	a0001	246	243	74	52	82	6	28	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	a0002	246	146	8	22	96	10	10	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	a0003	246	2	0	2	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	a0004	246	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	a0005	246	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP2A1_chr16_28873488_28909466	1/1	a0001	994	370	83	56	176	12	41	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0002	994	2	2	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0003	994	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0004	994	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0005	994	1	0	0	0	0	1	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0006	994	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0007	937	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0008	994	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0009	994	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	a0010	994	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A2_chr12_110276247_110356093	1/1	a0001	1042	225	88	61	34	16	24	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	a0002	1042	2	0	0	0	0	2	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	a0003	1042	1	0	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A3_chr17_3918873_3969437	1/1	a0001	999	300	64	71	108	15	40	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	a0002	999	22	20	2	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	a0003	999	3	3	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	a0004	999	2	0	2	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	a0005	999	2	0	1	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	a0006	999	2	0	2	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	a0007	999	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2B1_chr12_89583049_89713838	1/1	a0001	1220	329	86	59	128	14	40	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	a0002	1220	1	0	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	a0003	1220	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	a0004	1220	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B2_chr3_10319023_10510586	1/1	a0001	1243	287	84	54	95	12	40	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	a0002	1243	2	0	2	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	a0003	1243	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B3_chrX_153512642_153587929	0/0	a0000	0	3	1	0	1	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	1/1	a0001	1220	257	74	44	101	7	29	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	a0002	1220	2	0	0	2	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	a0003	1220	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	a0004	583	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	a0005	665	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	a0006	1149	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	a0007	76	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B4_chr1_203621832_203749081	1/1	a0001	1205	307	78	41	148	12	26	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0002	1205	3	3	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0003	1205	2	0	1	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0004	1205	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0005	1205	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0006	1205	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0007	1205	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081