JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SAGE1_chrX_135888716_135918062	1/0	a0001	904	186	49	27	85	6	18	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/1	a0002	904	30	4	7	14	3	1	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0003	904	18	2	3	12	0	1	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0004	904	7	7	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0005	904	3	3	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0006	904	2	2	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0007	282	1	0	1	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0008	904	1	0	0	1	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	a0009	903	1	0	1	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGSIN1_chr7_6324411_6353967	1/1	a0001	68	420	96	74	186	18	44	copy fasta	SAGSIN1	chr7	6324411	6353967
SAG_chr2_233302816_233352055	1/1	a0001	405	202	52	44	86	7	11	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0002	405	102	8	18	59	5	12	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0003	405	29	16	6	5	0	2	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0004	405	22	6	0	12	0	4	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0005	405	5	5	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0006	405	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0007	405	1	0	0	0	0	1	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0008	405	1	0	1	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0009	405	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0010	405	1	0	1	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0011	405	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0012	405	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	a0013	405	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SALL1_chr16_51130982_51156270	0/1	a0001	1324	308	63	67	139	13	25	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0002	1325	15	11	1	3	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0003	1324	13	6	3	2	1	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0004	1326	7	7	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0005	1324	4	0	0	4	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0006	1325	3	0	0	3	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0007	1324	3	1	0	2	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0008	1325	3	3	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0009	1324	2	1	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0010	1324	2	0	2	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	1/0	a0011	1324	2	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0012	1324	2	0	0	0	0	2	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0013	1324	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0014	1324	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0015	1324	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0016	1324	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0017	1324	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0018	1324	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0019	1325	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0020	1325	1	0	1	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0021	1328	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	a0022	1324	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL2_chr14_21516080_21531346	0/0	a0001	1005	212	35	41	105	7	24	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	1/0	a0002	1005	82	2	10	53	3	13	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0003	1005	67	16	10	36	1	4	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/1	a0004	1005	23	1	9	1	6	5	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0005	1005	21	4	3	10	1	3	copy fasta	SALL2	chr14	21516080	21531346