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geneid	55511
ensemblid	ENSG00000181433.12
hgncid	30369
symbol	SAGE1
name	sarcoma antigen 1
refseq_nuc	NM_001381902.1
refseq_prot	NP_001368831.1
ensembl_nuc	ENST00000370709.4
ensembl_prot	ENSP00000359743.3
mane_status	MANE Select
chr	chrX
start	135893716
end	135913062
strand	+
ver	v1.2
region	chrX:135893716-135913062
region5000	chrX:135888716-135918062
regionname0	SAGE1_chrX_135893716_135913062
regionname5000	SAGE1_chrX_135888716_135918062

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	904	186	49	27	85	6	18	66	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0002	0/1	904	30	4	7	14	3	1	10	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0003	0/0	904	18	2	3	12	0	1	8	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0004	0/0	904	7	7	0	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0005	0/0	904	3	3	0	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0006	0/0	904	2	2	0	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0007	0/0	282	1	0	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0008	0/0	904	1	0	0	1	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0009	0/0	903	1	0	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/0	2715	184	48	26	85	6	18	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0002	0/1	2715	29	3	7	14	3	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0003	0/0	2715	18	2	3	12	0	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0004	0/0	2715	7	7	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0005	0/0	2715	3	3	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0006	0/0	2715	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0007	0/0	2715	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0008	0/0	2715	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0009	0/0	2715	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0010	0/0	2712	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0011	0/0	2843	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
c0012	0/0	2715	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	232	248	67	39	112	8	20	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
t0002	0/0	232	1	0	0	0	1	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	114	24	21	57	5	7	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0002	0/1	18	1	6	6	3	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0003	0/0	9	8	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0004	0/0	8	2	1	4	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0005	0/0	7	0	0	6	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0006	1/0	6	5	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0007	0/0	4	3	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0008	0/0	4	0	0	4	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0009	0/0	4	0	0	4	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0010	0/0	4	2	0	0	0	2	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0011	0/0	4	1	1	2	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0012	0/0	4	0	0	4	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0013	0/0	3	3	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0014	0/0	3	2	0	0	1	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0015	0/0	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0016	0/0	2	0	0	2	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0017	0/0	2	0	0	2	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0018	0/0	2	0	1	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0019	0/0	2	0	2	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0020	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0021	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0022	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0023	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0024	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0025	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0026	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0027	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0028	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0029	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0030	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0031	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0032	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0033	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0034	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0035	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0036	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0037	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0038	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0039	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0040	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0041	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0042	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0043	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0044	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0045	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0046	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0047	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0048	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0049	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0050	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0051	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0052	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0053	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0054	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0055	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0056	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0057	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0058	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0059	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0060	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0061	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0062	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0063	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0064	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0065	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
g0066	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	2715	184	48	26	85	6	18	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0001c0008	0/0	2715	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0001c0012	0/0	2715	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0002c0002	0/1	2715	29	3	7	14	3	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0002c0007	0/0	2715	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0003c0003	0/0	2715	18	2	3	12	0	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0004c0004	0/0	2715	7	7	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0005c0005	0/0	2715	3	3	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0006c0006	0/0	2715	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0007c0011	0/0	2843	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0008c0009	0/0	2715	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0009c0010	0/0	2712	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	2946	183	48	26	85	5	18	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0001c0001t0002	0/0	2946	1	0	0	0	1	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0001c0008t0001	0/0	2946	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0001c0012t0001	0/0	2946	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0002c0002t0001	0/1	2946	29	3	7	14	3	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0002c0007t0001	0/0	2946	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0003c0003t0001	0/0	2946	18	2	3	12	0	1	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0004c0004t0001	0/0	2946	7	7	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0005c0005t0001	0/0	2946	3	3	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0006c0006t0001	0/0	2946	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0007c0011t0001	0/0	3074	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0008c0009t0001	0/0	2946	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062
a0009c0010t0001	0/0	2943	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	copy fasta	chrX	135888716	135918062

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	106	18	20	57	4	7	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0003	0/0	9	8	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0004	0/0	8	2	1	4	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0006	1/0	6	5	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0007	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0008	0/0	3	0	0	3	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0009	0/0	4	0	0	4	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0010	0/0	4	2	0	0	0	2	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0014	0/0	3	2	0	0	1	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0015	0/0	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0016	0/0	2	0	0	2	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0017	0/0	2	0	0	2	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0018	0/0	2	0	1	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0020	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0023	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0024	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0025	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0026	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0030	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0032	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0033	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0035	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0037	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0039	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0040	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0041	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0042	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0043	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0044	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0045	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0046	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0048	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0050	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0051	0/0	1	0	0	0	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0052	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0001g0065	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0001t0002g0001	0/0	1	0	0	0	1	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0008t0001g0001	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0001c0012t0001g0001	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0002	0/1	18	1	6	6	3	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0011	0/0	4	1	1	2	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0053	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0055	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0058	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0059	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0060	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0061	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0002t0001g0062	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0002c0007t0001g0063	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0005	0/0	7	0	0	6	0	1	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0012	0/0	4	0	0	4	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0019	0/0	2	0	2	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0054	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0056	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0057	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0064	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0003c0003t0001g0066	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0004c0004t0001g0001	0/0	3	3	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0004c0004t0001g0007	0/0	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0004c0004t0001g0036	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0004c0004t0001g0047	0/0	1	1	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0005c0005t0001g0013	0/0	3	3	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0006c0006t0001g0001	0/0	2	2	0	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0007c0011t0001g0007	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0008c0009t0001g0008	0/0	1	0	0	1	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
a0009c0010t0001g0027	0/0	1	0	1	0	0	0	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0002	g0001	EUR	GBR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00099	hp2	a0002	c0002	t0001	g0002	EUR	GBR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00140	hp1	a0002	c0002	t0001	g0002	EUR	GBR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00280	hp1	a0002	c0002	t0001	g0002	EUR	FIN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00438	hp1	a0001	c0001	t0001	g0038	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00438	hp2	a0003	c0003	t0001	g0005	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00544	hp2	a0003	c0003	t0001	g0005	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00609	hp1	a0001	c0001	t0001	g0008	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00639	hp1	a0001	c0001	t0001	g0003	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00639	hp2	a0007	c0011	t0001	g0007	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00673	hp1	a0003	c0003	t0001	g0064	EAS	CHS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00735	hp2	a0002	c0002	t0001	g0002	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG00738	hp1	a0002	c0002	t0001	g0002	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01074	hp1	a0002	c0002	t0001	g0002	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01106	hp1	a0002	c0002	t0001	g0002	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01167	hp1	a0001	c0001	t0001	g0048	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01175	hp2	a0002	c0002	t0001	g0002	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01243	hp1	a0001	c0001	t0001	g0024	AMR	PUR	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01255	hp1	a0002	c0002	t0001	g0002	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01256	hp1	a0001	c0001	t0001	g0052	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01261	hp1	a0003	c0003	t0001	g0054	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01346	hp1	a0009	c0010	t0001	g0027	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01346	hp2	a0003	c0003	t0001	g0019	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01358	hp1	a0002	c0002	t0001	g0011	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01517	hp1	a0001	c0001	t0001	g0014	EUR	IBS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01884	hp1	a0001	c0001	t0001	g0007	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01884	hp2	a0001	c0001	t0001	g0003	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01891	hp1	a0004	c0004	t0001	g0047	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01928	hp1	a0001	c0001	t0001	g0004	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01993	hp1	a0003	c0003	t0001	g0019	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02040	hp1	a0001	c0001	t0001	g0049	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02055	hp1	a0001	c0001	t0001	g0004	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02056	hp1	a0001	c0001	t0001	g0031	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02080	hp2	a0002	c0002	t0001	g0011	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02083	hp1	a0001	c0001	t0001	g0043	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02135	hp1	a0001	c0001	t0001	g0004	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02145	hp1	a0001	c0001	t0001	g0015	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02148	hp1	a0001	c0012	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02148	hp2	a0001	c0001	t0001	g0018	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02165	hp1	a0003	c0003	t0001	g0005	EAS	CDX	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02257	hp1	a0005	c0005	t0001	g0013	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02523	hp2	a0002	c0002	t0001	g0060	EAS	KHV	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02572	hp1	a0001	c0001	t0001	g0004	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02602	hp1	a0001	c0001	t0001	g0010	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02622	hp1	a0006	c0006	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02622	hp2	a0001	c0001	t0001	g0006	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02647	hp1	a0001	c0001	t0001	g0025	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02683	hp2	a0001	c0001	t0001	g0032	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02717	hp1	a0001	c0001	t0001	g0003	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02723	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02723	hp2	a0001	c0001	t0001	g0003	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02735	hp1	a0002	c0002	t0001	g0002	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02738	hp1	a0001	c0001	t0001	g0035	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02809	hp1	a0001	c0001	t0001	g0006	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02809	hp2	a0001	c0001	t0001	g0010	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02818	hp1	a0005	c0005	t0001	g0013	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02818	hp2	a0001	c0001	t0001	g0003	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02886	hp1	a0002	c0002	t0001	g0011	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02886	hp2	a0001	c0001	t0001	g0044	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02922	hp1	a0004	c0004	t0001	g0001	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02965	hp1	a0004	c0004	t0001	g0036	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02970	hp1	a0002	c0002	t0001	g0062	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02970	hp2	a0001	c0001	t0001	g0010	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02976	hp1	a0001	c0008	t0001	g0001	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02976	hp2	a0001	c0001	t0001	g0003	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03098	hp1	a0004	c0004	t0001	g0001	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03130	hp1	a0004	c0004	t0001	g0007	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03139	hp1	a0003	c0003	t0001	g0056	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03195	hp1	a0006	c0006	t0001	g0001	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03195	hp2	a0001	c0001	t0001	g0014	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03209	hp1	a0001	c0001	t0001	g0023	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03453	hp1	a0001	c0001	t0001	g0040	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03453	hp2	a0001	c0001	t0001	g0003	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03486	hp2	a0001	c0001	t0001	g0006	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03490	hp1	a0001	c0001	t0001	g0045	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03492	hp1	a0001	c0001	t0001	g0020	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03516	hp1	a0002	c0007	t0001	g0063	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03516	hp2	a0001	c0001	t0001	g0015	AFR	ESN	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03579	hp1	a0001	c0001	t0001	g0003	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03688	hp1	a0001	c0001	t0001	g0010	SAS	STU	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03831	hp1	a0001	c0001	t0001	g0042	SAS	BEB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03831	hp2	a0001	c0001	t0001	g0033	SAS	BEB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG04115	hp1	a0001	c0001	t0001	g0046	SAS	STU	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG04204	hp1	a0001	c0001	t0001	g0051	SAS	STU	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG04228	hp1	a0003	c0003	t0001	g0005	SAS	STU	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18612	hp1	a0002	c0002	t0001	g0059	EAS	CHB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18747	hp1	a0002	c0002	t0001	g0002	EAS	CHB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18906	hp1	a0001	c0001	t0001	g0014	AFR	YRI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18942	hp1	a0002	c0002	t0001	g0002	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18945	hp1	a0003	c0003	t0001	g0012	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18946	hp2	a0001	c0001	t0001	g0016	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18951	hp1	a0001	c0001	t0001	g0009	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18959	hp1	a0001	c0001	t0001	g0021	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18961	hp1	a0001	c0001	t0001	g0004	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18962	hp1	a0003	c0003	t0001	g0005	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18964	hp2	a0002	c0002	t0001	g0002	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18965	hp1	a0001	c0001	t0001	g0016	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18967	hp1	a0008	c0009	t0001	g0008	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18975	hp2	a0002	c0002	t0001	g0002	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18985	hp1	a0002	c0002	t0001	g0061	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18986	hp1	a0001	c0001	t0001	g0017	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18990	hp1	a0003	c0003	t0001	g0012	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18991	hp2	a0002	c0002	t0001	g0011	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18999	hp1	a0003	c0003	t0001	g0012	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18999	hp2	a0001	c0001	t0001	g0028	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19000	hp1	a0003	c0003	t0001	g0005	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19002	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19002	hp2	a0001	c0001	t0001	g0008	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19005	hp1	a0002	c0002	t0001	g0002	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19010	hp1	a0001	c0001	t0001	g0009	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19030	hp1	a0001	c0001	t0001	g0026	AFR	LWK	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19030	hp2	a0004	c0004	t0001	g0007	AFR	LWK	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19054	hp1	a0002	c0002	t0001	g0055	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19054	hp2	a0001	c0001	t0001	g0004	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19055	hp1	a0001	c0001	t0001	g0017	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19062	hp1	a0001	c0001	t0001	g0004	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19065	hp1	a0001	c0001	t0001	g0009	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19066	hp1	a0001	c0001	t0001	g0009	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19067	hp1	a0002	c0002	t0001	g0053	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19072	hp1	a0002	c0002	t0001	g0058	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19074	hp2	a0003	c0003	t0001	g0005	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19076	hp1	a0001	c0001	t0001	g0034	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19078	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19078	hp2	a0001	c0001	t0001	g0037	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19079	hp1	a0003	c0003	t0001	g0012	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19081	hp1	a0002	c0002	t0001	g0002	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19081	hp2	a0003	c0003	t0001	g0066	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19083	hp1	a0001	c0001	t0001	g0029	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19084	hp1	a0001	c0001	t0001	g0008	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19085	hp1	a0001	c0001	t0001	g0041	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19089	hp1	a0001	c0001	t0001	g0018	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19091	hp1	a0001	c0001	t0001	g0050	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19240	hp1	a0001	c0001	t0001	g0006	AFR	YRI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA19240	hp2	a0001	c0001	t0001	g0003	AFR	YRI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20129	hp1	a0005	c0005	t0001	g0013	AFR	ASW	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20129	hp2	a0003	c0003	t0001	g0057	AFR	ASW	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20905	hp1	a0001	c0001	t0001	g0004	SAS	GIH	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02486	hp1	a0001	c0001	t0001	g0065	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02559	hp1	a0002	c0002	t0001	g0002	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG03471	hp1	a0004	c0004	t0001	g0001	AFR	MSL	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
HG06807	hp2	a0001	c0001	t0001	g0006	AFR	USA	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA18955	hp1	a0001	c0001	t0001	g0030	EAS	JPT	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA20300	hp2	a0001	c0001	t0001	g0022	AFR	USA	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
NA21309	hp2	a0001	c0001	t0001	g0039	AFR	LWK	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
homoSapiens_chm13v2	hp1	a0002	c0002	t0001	g0002	REF	REF	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0006	REF	REF	SAGE1_chrX_135888716_135918062	SAGE1	chrX	135888716	135918062

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:135906955	GAGA GAGA	G G	1	a0009 a0009	1	HG01346.hp1 HG01346.hp1	disruptive_inframe_deletion	MODERATE	c.770_772delAGA c.770_772delAGA	p.Lys257del p.Lys257del	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	8/20	836/2946	770/2715	257/904	INFO_REALIGN_3_PRIME	chrX	135906955
chrX:135906991	A A	T T	1	a0006 a0006	2	HG02622.hp1 HG03195.hp1 HG02622.hp1 HG03195.hp1	missense_variant	MODERATE	c.802A>T c.802A>T	p.Ile268Phe p.Ile268Phe	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	8/20	868/2946	802/2715	268/904		chrX	135906991
chrX:135907801	G G	T T	1	a0005 a0005	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	missense_variant	MODERATE	c.1119G>T c.1119G>T	p.Leu373Phe p.Leu373Phe	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	10/20	1185/2946	1119/2715	373/904		chrX	135907801
chrX:135907841	C C	T T	1	a0003 a0003	18	HG00438.hp2 HG00544.hp2 HG00673.hp1 others(15): Show HG00438.hp2 HG00544.hp2 HG00673.hp1 HG01261.hp1 HG01346.hp2 HG01993.hp1 HG02165.hp1 HG03139.hp1 HG04228.hp1 NA18945.hp1 NA18962.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2 NA20129.hp2	missense_variant&splice_region_variant	MODERATE	c.1159C>T c.1159C>T	p.His387Tyr p.His387Tyr	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	10/20	1225/2946	1159/2715	387/904		chrX	135907841
chrX:135911255	A A	T T	1	a0005 a0005	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	missense_variant	MODERATE	c.2069A>T c.2069A>T	p.Asn690Ile p.Asn690Ile	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	17/20	2135/2946	2069/2715	690/904		chrX	135911255
chrX:135911655	T T	G G	1	a0004 a0004	7	HG01891.hp1 HG02922.hp1 HG02965.hp1 others(4): Show HG01891.hp1 HG02922.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03471.hp1 NA19030.hp2	missense_variant	MODERATE	c.2223T>G c.2223T>G	p.Asn741Lys p.Asn741Lys	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	18/20	2289/2946	2223/2715	741/904		chrX	135911655
chrX:135911729	A A	T T	1	a0005 a0005	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	missense_variant	MODERATE	c.2297A>T c.2297A>T	p.Asp766Val p.Asp766Val	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	18/20	2363/2946	2297/2715	766/904		chrX	135911729
chrX:135911846	T T	C C	2	a0002 a0003 a0002 a0003	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.2414T>C c.2414T>C	p.Leu805Ser p.Leu805Ser	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	18/20	2480/2946	2414/2715	805/904		chrX	135911846
chrX:135912353	G G	C C	1	a0008 a0008	1	NA18967.hp1 NA18967.hp1	missense_variant	MODERATE	c.2554G>C c.2554G>C	p.Val852Leu p.Val852Leu	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	19/20	2620/2946	2554/2715	852/904		chrX	135912353

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:135896266	G G	A A	3	a0002c0002 a0002c0007 a0003c0003 a0002c0002 a0002c0007 a0003c0003	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.24G>A c.24G>A	p.Thr8Thr p.Thr8Thr	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/20	90/2946	24/2715	8/904	chrX	135896266
chrX:135904541	T T	C C	3	a0002c0002 a0002c0007 a0003c0003 a0002c0002 a0002c0007 a0003c0003	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.285T>C c.285T>C	p.Asn95Asn p.Asn95Asn	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/20	351/2946	285/2715	95/904	chrX	135904541
chrX:135905301	A A	G G	1	a0001c0012 a0001c0012	1	HG02148.hp1 HG02148.hp1	synonymous_variant	LOW	c.363A>G c.363A>G	p.Gln121Gln p.Gln121Gln	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	5/20	429/2946	363/2715	121/904	chrX	135905301
chrX:135908120	G G	A A	1	a0001c0008 a0001c0008	1	HG02976.hp1 HG02976.hp1	synonymous_variant	LOW	c.1191G>A c.1191G>A	p.Glu397Glu p.Glu397Glu	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	11/20	1257/2946	1191/2715	397/904	chrX	135908120
chrX:135908919	A A	G G	3	a0002c0002 a0002c0007 a0003c0003 a0002c0002 a0002c0007 a0003c0003	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.1497A>G c.1497A>G	p.Gln499Gln p.Gln499Gln	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	13/20	1563/2946	1497/2715	499/904	chrX	135908919
chrX:135911895	G G	A A	1	a0002c0002 a0002c0002	29	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(26): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01358.hp1 HG02080.hp2 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18991.hp2 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19081.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.2463G>A c.2463G>A	p.Lys821Lys p.Lys821Lys	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	18/20	2529/2946	2463/2715	821/904	chrX	135911895
chrX:135912352	G G	A A	1	a0008c0009 a0008c0009	1	NA18967.hp1 NA18967.hp1	synonymous_variant	LOW	c.2553G>A c.2553G>A	p.Glu851Glu p.Glu851Glu	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	19/20	2619/2946	2553/2715	851/904	chrX	135912352

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:135912919	G G	T T	1	a0001c0001t0002 a0001c0001t0002	1	HG00099.hp1 HG00099.hp1	3_prime_UTR_variant	MODIFIER	c.22G>T c.22G>T		SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	20/20				22		chrX	135912919

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:135894146	T T	C C	1	a0005c0005t0001g0013 a0005c0005t0001g0013	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-1+365T>C c.-1+365T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894146
chrX:135894192	C C	A A	54	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(51): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	194	HG00099.hp1 HG00438.hp1 HG00544.hp1 others(191): Show HG00099.hp1 HG00438.hp1 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-1+411C>A c.-1+411C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894192
chrX:135894193	C C	T T	1	a0005c0005t0001g0013 a0005c0005t0001g0013	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-1+412C>T c.-1+412C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894193
chrX:135894234	A A	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-1+453A>G c.-1+453A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894234
chrX:135894314	C C	T T	2	a0003c0003t0001g0012 a0003c0003t0001g0066 a0003c0003t0001g0012 a0003c0003t0001g0066	5	NA18945.hp1 NA18990.hp1 NA18999.hp1 others(2): Show NA18945.hp1 NA18990.hp1 NA18999.hp1 NA19079.hp1 NA19081.hp2	intron_variant	MODIFIER	c.-1+533C>T c.-1+533C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894314
chrX:135894339	T T	C C	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG03492.hp1 HG03492.hp1	intron_variant	MODIFIER	c.-1+558T>C c.-1+558T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894339
chrX:135894868	CG CG	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-1+1090delG c.-1+1090delG	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135894868
chrX:135894934	TTA TTA	T T	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-1+1155_-1+1156del others(2): Show c.-1+1155_-1+1156delAT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135894934
chrX:135894936	AT AT	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.-1+1162delT c.-1+1162delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135894936
chrX:135894937	T T	A A	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-1+1156T>A c.-1+1156T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135894937
chrX:135894987	A A	AGTTT AGTTT	57	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(54): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	207	HG00099.hp1 HG00438.hp1 HG00438.hp2 others(204): Show HG00099.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-1+1227_-1+1230dup others(4): Show c.-1+1227_-1+1230dupGTTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135894987
chrX:135894987	A A	AGTTTGTT others(1): Show AGTTTGTTT	12	a0001c0001t0001g0022 a0002c0002t0001g0002 a0002c0002t0001g0011 others(9): Show a0001c0001t0001g0022 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0056 a0003c0003t0001g0057	32	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(29): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01358.hp1 HG02080.hp2 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18991.hp2 NA19005.hp1 NA19054.hp1 NA19072.hp1 NA19081.hp1 NA20129.hp2 NA20300.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-1+1223_-1+1230dup others(8): Show c.-1+1223_-1+1230dupGTTTGTTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135894987
chrX:135894987	A A	AGTTTGTT others(5): Show AGTTTGTTTGTTT	1	a0003c0003t0001g0054 a0003c0003t0001g0054	1	HG01261.hp1 HG01261.hp1	intron_variant	MODIFIER	c.-1+1219_-1+1230dup others(12): Show c.-1+1219_-1+1230dupGTTTGTTTGTTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135894987
chrX:135895009	T T	TTTGTTTG TTTGTTTG	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-1+1230_-1+1231ins others(7): Show c.-1+1230_-1+1231insGTTTGTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135895009
chrX:135895080	TC TC	T T	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1-1161delC c.1-1161delC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135895080
chrX:135895177	T T	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1-1066T>C c.1-1066T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135895177
chrX:135895369	G G	GT GT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1-873dupT c.1-873dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135895369
chrX:135895626	T T	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1-617T>C c.1-617T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135895626
chrX:135895663	A A	C C	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1-580A>C c.1-580A>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135895663
chrX:135895733	T T	C C	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.1-510T>C c.1-510T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135895733
chrX:135895916	GC GC	G G	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1-324delC c.1-324delC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135895916
chrX:135895934	T T	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1-309T>G c.1-309T>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135895934
chrX:135896000	G G	A A	2	a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0022 a0001c0001t0001g0024	2	HG01243.hp1 NA20300.hp2 HG01243.hp1 NA20300.hp2	intron_variant	MODIFIER	c.1-243G>A c.1-243G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19		chrX	135896000
chrX:135896086	A A	AC AC	2	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0049 a0001c0001t0001g0050	2	HG02040.hp1 NA19091.hp1 HG02040.hp1 NA19091.hp1	intron_variant	MODIFIER	c.1-155dupC c.1-155dupC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135896086
chrX:135896186	G G	GT GT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1-55dupT c.1-55dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	1/19	INFO_REALIGN_3_PRIME	chrX	135896186
chrX:135896403	A A	AT AT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+75dupT c.87+75dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896403
chrX:135896446	T T	C C	1	a0002c0002t0001g0055 a0002c0002t0001g0055	1	NA19054.hp1 NA19054.hp1	intron_variant	MODIFIER	c.87+117T>C c.87+117T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896446
chrX:135896523	A A	ATTTAT ATTTAT	2	a0001c0001t0001g0018 a0001c0001t0001g0048 a0001c0001t0001g0018 a0001c0001t0001g0048	3	HG01167.hp1 HG02148.hp2 NA19089.hp1 HG01167.hp1 HG02148.hp2 NA19089.hp1	intron_variant	MODIFIER	c.87+222_87+226dupTA others(3): Show c.87+222_87+226dupTATTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896523
chrX:135896552	A A	AT AT	13	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(10): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	42	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(39): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01358.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+226dupT c.87+226dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896552
chrX:135896552	A A	ATTTTAT ATTTTAT	3	a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0019 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0019	4	HG01346.hp2 HG01993.hp1 HG02970.hp1 others(1): Show HG01346.hp2 HG01993.hp1 HG02970.hp1 HG03516.hp1	intron_variant	MODIFIER	c.87+226_87+227insTA others(4): Show c.87+226_87+227insTATTTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896552
chrX:135896558	A A	T T	16	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(13): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	46	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(43): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+229A>T c.87+229A>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896558
chrX:135896560	C C	A A	16	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(13): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	46	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(43): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+231C>A c.87+231C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896560
chrX:135896560	C C	CT CT	2	a0001c0001t0001g0010 a0001c0001t0001g0048 a0001c0001t0001g0010 a0001c0001t0001g0048	5	HG01167.hp1 HG02602.hp1 HG02809.hp2 others(2): Show HG01167.hp1 HG02602.hp1 HG02809.hp2 HG02970.hp2 HG03688.hp1	intron_variant	MODIFIER	c.87+246dupT c.87+246dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896560
chrX:135896560	CT CT	C C	6	a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0015 others(3): Show a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0021 a0004c0004t0001g0007 a0007c0011t0001g0007	16	HG00639.hp1 HG00639.hp2 HG01884.hp1 others(13): Show HG00639.hp1 HG00639.hp2 HG01884.hp1 HG01884.hp2 HG02145.hp1 HG02717.hp1 HG02723.hp2 HG02818.hp2 HG02976.hp2 HG03130.hp1 HG03453.hp2 HG03516.hp2 HG03579.hp1 NA18959.hp1 NA19030.hp2 NA19240.hp2	intron_variant	MODIFIER	c.87+246delT c.87+246delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896560
chrX:135896560	CTTT CTTT	C C	2	a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0054 a0003c0003t0001g0056	2	HG01261.hp1 HG03139.hp1 HG01261.hp1 HG03139.hp1	intron_variant	MODIFIER	c.87+244_87+246delTT others(1): Show c.87+244_87+246delTTT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896560
chrX:135896561	T T	TA TA	16	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(13): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	46	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(43): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+232_87+233insA c.87+232_87+233insA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896561
chrX:135896563	T T	C C	16	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(13): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	46	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(43): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+234T>C c.87+234T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896563
chrX:135896621	C C	T T	1	a0004c0004t0001g0047 a0004c0004t0001g0047	1	HG01891.hp1 HG01891.hp1	intron_variant	MODIFIER	c.87+292C>T c.87+292C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896621
chrX:135896648	TC TC	T T	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+322delC c.87+322delC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896648
chrX:135896941	C C	A A	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.87+612C>A c.87+612C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135896941
chrX:135896972	A A	AT AT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+644dupT c.87+644dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135896972
chrX:135897049	TC TC	T T	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+724delC c.87+724delC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897049
chrX:135897128	T T	TA TA	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+806dupA c.87+806dupA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897128
chrX:135897147	T T	TC TC	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+820dupC c.87+820dupC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897147
chrX:135897325	CA CA	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1000delA c.87+1000delA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897325
chrX:135897350	C C	CG CG	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1021_87+1022ins others(1): Show c.87+1021_87+1022insG	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135897350
chrX:135897401	CT CT	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1075delT c.87+1075delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897401
chrX:135897412	CT CT	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1089delT c.87+1089delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897412
chrX:135897554	CT CT	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1229delT c.87+1229delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897554
chrX:135897580	GA GA	G G	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1255delA c.87+1255delA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135897580
chrX:135897906	A A	G G	1	a0001c0001t0001g0017 a0001c0001t0001g0017	2	NA18986.hp1 NA19055.hp1 NA18986.hp1 NA19055.hp1	intron_variant	MODIFIER	c.87+1577A>G c.87+1577A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135897906
chrX:135897980	C C	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.87+1651C>T c.87+1651C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135897980
chrX:135898018	A A	AT AT	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.87+1697dupT c.87+1697dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135898018
chrX:135898027	CT CT	C C	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.87+1706delT c.87+1706delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135898027
chrX:135898113	G G	A A	3	a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057	3	HG01261.hp1 HG03139.hp1 NA20129.hp2 HG01261.hp1 HG03139.hp1 NA20129.hp2	intron_variant	MODIFIER	c.87+1784G>A c.87+1784G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898113
chrX:135898241	C C	G G	70	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(67): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	238	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(235): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+1912C>G c.87+1912C>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898241
chrX:135898270	T T	C C	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+1941T>C c.87+1941T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898270
chrX:135898278	C C	CA CA	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+1952dupA c.87+1952dupA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135898278
chrX:135898302	A A	C C	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.87+1973A>C c.87+1973A>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898302
chrX:135898308	C C	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+1979C>T c.87+1979C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898308
chrX:135898315	G G	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+1986G>A c.87+1986G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898315
chrX:135898472	A A	AT AT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.87+2144dupT c.87+2144dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135898472
chrX:135898497	G G	A A	8	a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 others(5): Show a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	18	HG00438.hp2 HG00544.hp2 HG00673.hp1 others(15): Show HG00438.hp2 HG00544.hp2 HG00673.hp1 HG01261.hp1 HG01346.hp2 HG01993.hp1 HG02165.hp1 HG03139.hp1 HG04228.hp1 NA18945.hp1 NA18962.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2 NA20129.hp2	intron_variant	MODIFIER	c.87+2168G>A c.87+2168G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898497
chrX:135898801	G G	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.87+2472G>C c.87+2472G>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898801
chrX:135898893	G G	A A	3	a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057	3	HG01261.hp1 HG03139.hp1 NA20129.hp2 HG01261.hp1 HG03139.hp1 NA20129.hp2	intron_variant	MODIFIER	c.87+2564G>A c.87+2564G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135898893
chrX:135899096	A A	AT AT	2	a0001c0001t0001g0043 a0002c0002t0001g0053 a0001c0001t0001g0043 a0002c0002t0001g0053	2	HG02083.hp1 NA19067.hp1 HG02083.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-2454dupT c.88-2454dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135899096
chrX:135899224	T T	TC TC	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-2332dupC c.88-2332dupC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135899224
chrX:135899268	G G	GT GT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-2286dupT c.88-2286dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135899268
chrX:135899286	G G	A A	1	a0001c0001t0001g0016 a0001c0001t0001g0016	2	NA18946.hp2 NA18965.hp1 NA18946.hp2 NA18965.hp1	intron_variant	MODIFIER	c.88-2273G>A c.88-2273G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135899286
chrX:135899445	CT CT	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-2112delT c.88-2112delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135899445
chrX:135899487	G G	A A	1	a0002c0002t0001g0062 a0002c0002t0001g0062	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.88-2072G>A c.88-2072G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135899487
chrX:135899502	T T	A A	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-2057T>A c.88-2057T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135899502
chrX:135899503	A A	C C	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.88-2056A>C c.88-2056A>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135899503
chrX:135899747	T T	C C	1	a0002c0002t0001g0058 a0002c0002t0001g0058	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.88-1812T>C c.88-1812T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135899747
chrX:135899758	G G	A A	1	a0009c0010t0001g0027 a0009c0010t0001g0027	1	HG01346.hp1 HG01346.hp1	intron_variant	MODIFIER	c.88-1801G>A c.88-1801G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135899758
chrX:135899966	CT CT	C C	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-1588delT c.88-1588delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135899966
chrX:135900001	A A	T T	2	a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0054 a0003c0003t0001g0056	2	HG01261.hp1 HG03139.hp1 HG01261.hp1 HG03139.hp1	intron_variant	MODIFIER	c.88-1558A>T c.88-1558A>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900001
chrX:135900196	A A	T T	2	a0001c0001t0001g0009 a0001c0001t0001g0041 a0001c0001t0001g0009 a0001c0001t0001g0041	5	NA18951.hp1 NA19010.hp1 NA19065.hp1 others(2): Show NA18951.hp1 NA19010.hp1 NA19065.hp1 NA19066.hp1 NA19085.hp1	intron_variant	MODIFIER	c.88-1363A>T c.88-1363A>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900196
chrX:135900262	T T	C C	2	a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0054 a0003c0003t0001g0056	2	HG01261.hp1 HG03139.hp1 HG01261.hp1 HG03139.hp1	intron_variant	MODIFIER	c.88-1297T>C c.88-1297T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900262
chrX:135900285	T T	C C	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	NA18999.hp2 NA18999.hp2	intron_variant	MODIFIER	c.88-1274T>C c.88-1274T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900285
chrX:135900351	T T	C C	1	a0003c0003t0001g0057 a0003c0003t0001g0057	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.88-1208T>C c.88-1208T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900351
chrX:135900354	T T	TC TC	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-1205_88-1204ins others(1): Show c.88-1205_88-1204insC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900354
chrX:135900448	GT GT	G G	1	a0005c0005t0001g0013 a0005c0005t0001g0013	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	intron_variant	MODIFIER	c.88-1102delT c.88-1102delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135900448
chrX:135900463	A A	AC AC	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-1096_88-1095ins others(1): Show c.88-1096_88-1095insC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900463
chrX:135900517	T T	A A	1	a0002c0002t0001g0059 a0002c0002t0001g0059	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.88-1042T>A c.88-1042T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900517
chrX:135900544	GA GA	G G	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-1013delA c.88-1013delA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135900544
chrX:135900553	C C	CT CT	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-1006_88-1005ins others(1): Show c.88-1006_88-1005insT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900553
chrX:135900554	G G	A A	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.88-1005G>A c.88-1005G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900554
chrX:135900583	C C	G G	8	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(5): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061	28	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(25): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01358.hp1 HG02080.hp2 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18991.hp2 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19081.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.88-976C>G c.88-976C>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900583
chrX:135900770	CT CT	C C	54	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(51): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	194	HG00099.hp1 HG00438.hp1 HG00544.hp1 others(191): Show HG00099.hp1 HG00438.hp1 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.88-785delT c.88-785delT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135900770
chrX:135900931	G G	A A	5	a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 others(2): Show a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0064 a0003c0003t0001g0066	15	HG00438.hp2 HG00544.hp2 HG00673.hp1 others(12): Show HG00438.hp2 HG00544.hp2 HG00673.hp1 HG01346.hp2 HG01993.hp1 HG02165.hp1 HG04228.hp1 NA18945.hp1 NA18962.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2	intron_variant	MODIFIER	c.88-628G>A c.88-628G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135900931
chrX:135901040	A A	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.88-519A>G c.88-519A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135901040
chrX:135901065	T T	C C	4	a0001c0001t0001g0008 a0001c0001t0001g0029 a0001c0001t0001g0030 others(1): Show a0001c0001t0001g0008 a0001c0001t0001g0029 a0001c0001t0001g0030 a0008c0009t0001g0008	6	HG00609.hp1 NA18955.hp1 NA18967.hp1 others(3): Show HG00609.hp1 NA18955.hp1 NA18967.hp1 NA19002.hp2 NA19083.hp1 NA19084.hp1	intron_variant	MODIFIER	c.88-494T>C c.88-494T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135901065
chrX:135901141	T T	TA TA	5	a0002c0002t0001g0002 a0002c0002t0001g0055 a0002c0002t0001g0058 others(2): Show a0002c0002t0001g0002 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060	22	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(19): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18964.hp2 NA18975.hp2 NA19005.hp1 NA19054.hp1 NA19072.hp1 NA19081.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.88-395dupA c.88-395dupA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901141	T T	TAA TAA	10	a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0007t0001g0063 others(7): Show a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0066	23	HG00438.hp2 HG00544.hp2 HG01261.hp1 others(20): Show HG00438.hp2 HG00544.hp2 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02886.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18945.hp1 NA18962.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19067.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2 NA20129.hp2	intron_variant	MODIFIER	c.88-396_88-395dupAA c.88-396_88-395dupAA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901141	T T	TAAA TAAA	1	a0003c0003t0001g0064 a0003c0003t0001g0064	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.88-397_88-395dupAA others(1): Show c.88-397_88-395dupAAA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901141	T T	TAAAA TAAAA	1	a0002c0002t0001g0062 a0002c0002t0001g0062	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.88-398_88-395dupAA others(2): Show c.88-398_88-395dupAAAA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901141	TA TA	T T	4	a0001c0001t0001g0004 a0001c0001t0001g0015 a0001c0001t0001g0031 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0001t0001g0041	12	HG01928.hp1 HG02055.hp1 HG02056.hp1 others(9): Show HG01928.hp1 HG02055.hp1 HG02056.hp1 HG02135.hp1 HG02145.hp1 HG02572.hp1 HG03516.hp2 NA18961.hp1 NA19054.hp2 NA19062.hp1 NA19085.hp1 NA20905.hp1	intron_variant	MODIFIER	c.88-395delA c.88-395delA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901141	TAA TAA	T T	46	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(43): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	178	HG00099.hp1 HG00438.hp1 HG00544.hp1 others(175): Show HG00099.hp1 HG00438.hp1 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02559.hp2 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18960.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA21309.hp1	intron_variant	MODIFIER	c.88-396_88-395delAA c.88-396_88-395delAA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901141	TAAA TAAA	T T	4	a0001c0001t0001g0021 a0001c0001t0001g0039 a0001c0001t0001g0040 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0048	4	HG01167.hp1 HG03453.hp1 NA18959.hp1 others(1): Show HG01167.hp1 HG03453.hp1 NA18959.hp1 NA21309.hp2	intron_variant	MODIFIER	c.88-397_88-395delAA others(1): Show c.88-397_88-395delAAA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901141
chrX:135901209	C C	CAAGGGCT others(8): Show CAAGGGCTGAGACAAA	1	a0002c0002t0001g0053 a0002c0002t0001g0053	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.88-348_88-334dupAG others(13): Show c.88-348_88-334dupAGGGCTGAGACAAAA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19	INFO_REALIGN_3_PRIME	chrX	135901209
chrX:135901381	C C	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.88-178C>T c.88-178C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	2/19		chrX	135901381
chrX:135902081	C C	T T	1	a0003c0003t0001g0057 a0003c0003t0001g0057	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.220+390C>T c.220+390C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902081
chrX:135902195	A A	T T	4	a0001c0001t0001g0014 a0001c0001t0001g0022 a0001c0001t0001g0023 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024	6	HG01243.hp1 HG01517.hp1 HG03195.hp2 others(3): Show HG01243.hp1 HG01517.hp1 HG03195.hp2 HG03209.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.220+504A>T c.220+504A>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902195
chrX:135902235	G G	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.220+544G>A c.220+544G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902235
chrX:135902382	C C	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.220+691C>T c.220+691C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902382
chrX:135902584	G G	A A	1	a0005c0005t0001g0013 a0005c0005t0001g0013	3	HG02257.hp1 HG02818.hp1 NA20129.hp1 HG02257.hp1 HG02818.hp1 NA20129.hp1	intron_variant	MODIFIER	c.220+893G>A c.220+893G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902584
chrX:135902639	A A	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	NA18955.hp1 NA18955.hp1	intron_variant	MODIFIER	c.220+948A>G c.220+948A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902639
chrX:135902763	C C	T T	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	HG00438.hp1 HG00438.hp1	intron_variant	MODIFIER	c.220+1072C>T c.220+1072C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135902763
chrX:135903066	A A	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.220+1375A>G c.220+1375A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903066
chrX:135903134	A A	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-1343A>T c.221-1343A>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903134
chrX:135903301	A A	G G	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-1176A>G c.221-1176A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903301
chrX:135903397	T T	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-1080T>A c.221-1080T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903397
chrX:135903488	C C	T T	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.221-989C>T c.221-989C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903488
chrX:135903545	A A	C C	1	a0009c0010t0001g0027 a0009c0010t0001g0027	1	HG01346.hp1 HG01346.hp1	intron_variant	MODIFIER	c.221-932A>C c.221-932A>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903545
chrX:135903774	A A	G G	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-703A>G c.221-703A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903774
chrX:135903776	CATCTTGC others(6): Show CATCTTGCTGCCTA	C C	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-700_221-688del others(13): Show c.221-700_221-688delATCTTGCTGCCTA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903776
chrX:135903791	C C	A A	72	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	242	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(239): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-686C>A c.221-686C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903791
chrX:135903818	C C	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-659C>G c.221-659C>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903818
chrX:135903922	T T	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-555T>A c.221-555T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903922
chrX:135903988	C C	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-489C>A c.221-489C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135903988
chrX:135904009	C C	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.221-468C>A c.221-468C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	3/19		chrX	135904009
chrX:135904606	T T	TGA TGA	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+38_313+39dupGA c.313+38_313+39dupGA	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19	INFO_REALIGN_3_PRIME	chrX	135904606
chrX:135904609	A A	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+40A>G c.313+40A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904609
chrX:135904612	T T	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+43T>C c.313+43T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904612
chrX:135904613	C C	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+44C>T c.313+44C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904613
chrX:135904614	A A	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+45A>G c.313+45A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904614
chrX:135904616	C C	G G	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+47C>G c.313+47C>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904616
chrX:135904617	C C	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+48C>T c.313+48C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904617
chrX:135904621	A A	T T	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+52A>T c.313+52A>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904621
chrX:135904622	G G	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+53G>C c.313+53G>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904622
chrX:135904711	T T	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+142T>C c.313+142T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904711
chrX:135904725	AG AG	A A	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.313+160delG c.313+160delG	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19	INFO_REALIGN_3_PRIME	chrX	135904725
chrX:135904821	A A	G G	10	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(7): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063	30	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(27): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01358.hp1 HG02080.hp2 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03516.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18991.hp2 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19081.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.313+252A>G c.313+252A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135904821
chrX:135905154	G G	A A	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	HG02683.hp2 HG02683.hp2	intron_variant	MODIFIER	c.314-98G>A c.314-98G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	4/19		chrX	135905154
chrX:135905660	T T	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.454+268T>C c.454+268T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	5/19		chrX	135905660
chrX:135905910	A A	C C	1	a0002c0007t0001g0063 a0002c0007t0001g0063	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.455-114A>C c.455-114A>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	5/19		chrX	135905910
chrX:135906203	T T	TCATATGC others(380): Show TCATATGCATACATAGTGCCATGAAGGGAGTAAGGTGGTTTTGTTGTGTT ATCGTTTCTGGCCTAAATCTGAGGGGTCTCACATCACCACCTGATATATC CTACTGCTTTATGAAATAATTTCATAGAAACTGAGCACCAGAGGGATATA CTTGTGAGTTGGCATAATGCACTTACCTCACAGCTCAACCTCTTCCTTTG GTTTCCAGATGCTACAGTCACTCACAATGTCTGTGAACAGAAGATGGAAA ATGTCCAACCAGCACCTGATAACGTGTTGTTGACTCTTCGACCACGGCGT ATTAATATGACAGACACTGGTATTTCACCCATGAGTACCAGGGATCCATG TAAGTTTGTTTATTTGTATTACTGTCCTACTTGGTTTC	16	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(13): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064	46	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(43): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.595+69_595+70insAA others(385): Show c.595+69_595+70insAAGGTGGTTTTGTTGTGTTATCGTTTCTGGCC TAAATCTGAGGGGTCTCACATCACCACCTGATATATCCTACTGCTTTATG AAATAATTTCATAGAAACTGAGCACCAGAGGGATATACTTGTGAGTTGGC ATAATGCACTTACCTCACAGCTCAACCTCTTCCTTTGGTTTCCAGATGCT ACAGTCACTCACAATGTCTGTGAACAGAAGATGGAAAATGTCCAACCAGC ACCTGATAACGTGTTGTTGACTCTTCGACCACGGCGTATTAATATGACAG ACACTGGTATTTCACCCATGAGTACCAGGGATCCATGTAAGTTTGTTTAT TTGTATTACTGTCCTACTTGGTTTCCATATGCATACATAGTGCCATGAAG GGAGT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	6/19	INFO_REALIGN_3_PRIME	chrX	135906203
chrX:135906206	T T	TATGCATA others(380): Show TATGCATACATAGTGCCATGAAGGGAGTAAGGTGGTTTTGTTGTGTTATC GTTTCTGGCCTAAATCTGAGGGGTCTCACATCACCACCTGATATATCCTA CTGCTTTATGAAATAATTTCATAGAAACTGAGCACCAGAGGGATATACTT GTGAGTTGGCATAATGCACTTACCTCACAGCTCAACCTCTTCCTTTGGTT TCCAGATGCTACAGTCACTCACAATGTCTGTGAACAGAAGATGGAAAATG TCCAACCAGCACCTGATAACGTGTTGTTGACTCTTCGACCACGGCGTATT AATATGACAGACACTGGTATTTCACCCATGAGTACCAGGGATCCATGTAA GTTTGTTTATTTGTATTACTGTCCTACTTGGTTTCCAA	1	a0002c0002t0001g0055 a0002c0002t0001g0055	1	NA19054.hp1 NA19054.hp1	intron_variant	MODIFIER	c.595+69_595+70insAA others(385): Show c.595+69_595+70insAAGGTGGTTTTGTTGTGTTATCGTTTCTGGCC TAAATCTGAGGGGTCTCACATCACCACCTGATATATCCTACTGCTTTATG AAATAATTTCATAGAAACTGAGCACCAGAGGGATATACTTGTGAGTTGGC ATAATGCACTTACCTCACAGCTCAACCTCTTCCTTTGGTTTCCAGATGCT ACAGTCACTCACAATGTCTGTGAACAGAAGATGGAAAATGTCCAACCAGC ACCTGATAACGTGTTGTTGACTCTTCGACCACGGCGTATTAATATGACAG ACACTGGTATTTCACCCATGAGTACCAGGGATCCATGTAAGTTTGTTTAT TTGTATTACTGTCCTACTTGGTTTCCAAATGCATACATAGTGCCATGAAG GGAGT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	6/19	INFO_REALIGN_3_PRIME	chrX	135906206
chrX:135906234	T T	A A	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.595+70T>A c.595+70T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	6/19		chrX	135906234
chrX:135906319	T T	G G	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.596-92T>G c.596-92T>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	6/19		chrX	135906319
chrX:135906518	A A	ACTGGTAT others(121): Show ACTGGTATTTCACCCATGAGTACCAGGGATCCATGTAAGTTTGTTTATTT GTATTACTGTCCTACTTGGTTTCCATATGCATGCATAGTGTCAAAAAGCA TACAAGGTGGTTTTGTTGTATTGTCGTTC	1	a0007c0011t0001g0007 a0007c0011t0001g0007	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.736+92_737-156dupG others(127): Show c.736+92_737-156dupGTTCCTGGTATTTCACCCATGAGTACCAGGG ATCCATGTAAGTTTGTTTATTTGTATTACTGTCCTACTTGGTTTCCATAT GCATGCATAGTGTCAAAAAGCATACAAGGTGGTTTTGTTGTATTGTC	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	7/19	INFO_REALIGN_3_PRIME	chrX	135906518
chrX:135906609	C C	T T	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.736+58C>T c.736+58C>T	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	7/19		chrX	135906609
chrX:135906691	T T	A A	5	a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 others(2): Show a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0064 a0003c0003t0001g0066	15	HG00438.hp2 HG00544.hp2 HG00673.hp1 others(12): Show HG00438.hp2 HG00544.hp2 HG00673.hp1 HG01346.hp2 HG01993.hp1 HG02165.hp1 HG04228.hp1 NA18945.hp1 NA18962.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2	intron_variant	MODIFIER	c.736+140T>A c.736+140T>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	7/19		chrX	135906691
chrX:135907189	C C	A A	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.877+123C>A c.877+123C>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	8/19		chrX	135907189
chrX:135907946	A A	G G	1	a0004c0004t0001g0036 a0004c0004t0001g0036	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.1159+105A>G c.1159+105A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	10/19		chrX	135907946
chrX:135908039	T T	C C	1	a0002c0002t0001g0062 a0002c0002t0001g0062	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.1160-50T>C c.1160-50T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	10/19		chrX	135908039
chrX:135908785	T T	C C	18	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 others(15): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066	48	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00544.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01993.hp1 HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02559.hp1 HG02735.hp1 HG02886.hp1 HG02970.hp1 HG03139.hp1 HG03516.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp2 NA18975.hp2 NA18985.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19005.hp1 NA19054.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA20129.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1442-79T>C c.1442-79T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	12/19		chrX	135908785
chrX:135909085	T T	C C	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.1582+81T>C c.1582+81T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	13/19		chrX	135909085
chrX:135909467	G G	GT GT	2	a0001c0001t0001g0035 a0002c0002t0001g0061 a0001c0001t0001g0035 a0002c0002t0001g0061	2	HG02738.hp1 NA18985.hp1 HG02738.hp1 NA18985.hp1	intron_variant	MODIFIER	c.1583-165dupT c.1583-165dupT	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	13/19	INFO_REALIGN_3_PRIME	chrX	135909467
chrX:135909925	G G	A A	1	a0009c0010t0001g0027 a0009c0010t0001g0027	1	HG01346.hp1 HG01346.hp1	intron_variant	MODIFIER	c.1724-105G>A c.1724-105G>A	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	14/19		chrX	135909925
chrX:135910194	T T	G G	3	a0001c0001t0001g0009 a0001c0001t0001g0034 a0001c0001t0001g0041 a0001c0001t0001g0009 a0001c0001t0001g0034 a0001c0001t0001g0041	6	NA18951.hp1 NA19010.hp1 NA19065.hp1 others(3): Show NA18951.hp1 NA19010.hp1 NA19065.hp1 NA19066.hp1 NA19076.hp1 NA19085.hp1	intron_variant	MODIFIER	c.1864+24T>G c.1864+24T>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	15/19		chrX	135910194
chrX:135910395	A A	G G	2	a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0003 a0001c0001t0001g0015	11	HG00639.hp1 HG01884.hp2 HG02145.hp1 others(8): Show HG00639.hp1 HG01884.hp2 HG02145.hp1 HG02717.hp1 HG02723.hp2 HG02818.hp2 HG02976.hp2 HG03453.hp2 HG03516.hp2 HG03579.hp1 NA19240.hp2	intron_variant	MODIFIER	c.1865-20A>G c.1865-20A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	15/19		chrX	135910395
chrX:135910410	T T	C C	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	NA18999.hp2 NA18999.hp2	splice_region_variant&intron_variant	LOW	c.1865-5T>C c.1865-5T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	15/19		chrX	135910410
chrX:135911430	A A	G G	73	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(70): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0065 a0001c0001t0002g0001 a0001c0008t0001g0001 a0001c0012t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0053 a0002c0002t0001g0055 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0007t0001g0063 a0003c0003t0001g0005 a0003c0003t0001g0012 a0003c0003t0001g0019 a0003c0003t0001g0054 a0003c0003t0001g0056 a0003c0003t0001g0057 a0003c0003t0001g0064 a0003c0003t0001g0066 a0004c0004t0001g0001 a0004c0004t0001g0007 a0004c0004t0001g0036 a0004c0004t0001g0047 a0005c0005t0001g0013 a0006c0006t0001g0001 a0007c0011t0001g0007 a0008c0009t0001g0008 a0009c0010t0001g0027	243	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(240): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2146+98A>G c.2146+98A>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	17/19		chrX	135911430
chrX:135912035	T T	C C	2	a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0022 a0001c0001t0001g0024	2	HG01243.hp1 NA20300.hp2 HG01243.hp1 NA20300.hp2	intron_variant	MODIFIER	c.2521+82T>C c.2521+82T>C	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	18/19		chrX	135912035
chrX:135912182	C C	G G	2	a0002c0002t0001g0053 a0002c0002t0001g0060 a0002c0002t0001g0053 a0002c0002t0001g0060	2	HG02523.hp2 NA19067.hp1 HG02523.hp2 NA19067.hp1	intron_variant	MODIFIER	c.2522-139C>G c.2522-139C>G	SAGE1	ENSG00000181433.12	transcript	ENST00000370709.4	protein_coding	18/19		chrX	135912182

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 9)

CCoding Level Haplotype Info (Total: 12)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 66)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 12)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 13)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 74)

Haplotype Details by Sample (Haploid Level) (Total: 249)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 9)

CCoding Level Variants (Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 1)

GGenebody Level Haplotype Variants (Intron) (Total: 157)

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Annotation (Repeats)

Annotation (SNP Array)