JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SALL4_chr20_51777331_51807521	0/0	a0007	1053	2	1	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0008	1053	2	0	2	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0009	1053	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0010	1053	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0011	1053	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0012	1053	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0013	1053	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0014	1053	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SAMD10_chr20_63969116_63984642	1/1	a0001	202	339	86	70	118	17	46	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	a0002	202	2	0	2	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	a0003	202	1	0	0	0	1	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD11_chr1_918923_949574	0/1	a0001	844	321	54	57	146	17	46	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0002	844	40	3	8	29	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0003	611	10	2	6	0	1	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0004	876	9	8	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0005	876	8	8	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0006	844	5	5	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0007	860	5	5	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0008	844	4	0	0	4	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0009	892	4	3	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0010	844	3	0	0	3	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0011	860	3	2	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0012	844	2	0	2	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0013	892	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0014	844	2	0	0	2	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0015	844	2	0	2	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0016	860	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0017	844	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0018	892	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0019	844	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0020	844	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0021	844	1	0	0	0	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	1/0	a0022	844	1	0	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0023	844	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0024	431	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0025	611	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0026	844	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0027	844	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0028	844	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	a0029	844	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD12_chr8_118372984_118626963	1/1	a0001	201	187	71	30	50	0	34	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	a0002	201	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD13_chr1_84296708_84355798	1/1	a0001	102	316	82	64	122	14	32	copy fasta	SAMD13	chr1	84296708	84355798
SAMD14_chr17_50105040_50135160	1/1	a0001	417	396	91	80	163	12	48	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	a0002	417	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	a0003	409	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD15_chr14_77372379_77397163	1/1	a0001	674	138	9	34	79	3	11	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0002	674	107	56	15	14	6	16	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0003	674	47	9	20	2	5	11	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0004	674	7	6	1	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163