JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SASH1_chr6_148337838_148557044	0/0	a0005	1247	3	1	0	2	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0006	1247	3	2	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0007	1247	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0008	1247	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0009	1247	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0010	1247	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0011	1247	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0012	1247	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0013	1247	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0014	1249	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH3_chrX_129774949_129800201	1/1	a0001	380	300	76	46	134	11	31	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0002	123	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0003	380	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0004	380	1	0	0	0	0	1	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0005	380	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0006	380	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0007	122	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	a0008	380	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASS6_chr1_100078570_100137930	1/1	a0001	657	204	80	31	61	7	23	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	a0002	657	97	4	23	57	3	10	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	a0003	657	1	0	0	0	0	1	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	a0004	657	1	1	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	a0005	657	1	1	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SAT1_chrX_23778173_23791210	1/1	a0001	171	326	75	61	145	13	30	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	a0002	171	3	3	0	0	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	a0003	25	1	0	0	1	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT2_chr17_7621234_7632821	1/1	a0001	170	402	79	75	188	14	44	copy fasta	SAT2	chr17	7621234	7632821
SAT2_chr17_7621234_7632821	0/0	a0002	170	30	11	5	12	0	2	copy fasta	SAT2	chr17	7621234	7632821
SATB1_chr3_18340377_18430339	1/1	a0001	763	350	86	60	152	12	38	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	a0002	763	2	2	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB2_chr2_199264505_199462939	1/1	a0001	733	253	74	50	87	8	32	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	a0002	733	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATL1_chrX_85087284_85248779	0/0	a0001	695	136	35	15	63	3	20	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	1/1	a0002	695	58	7	12	34	2	1	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0003	695	15	11	2	2	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0004	695	11	8	3	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0005	695	3	3	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0006	695	2	2	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0007	695	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0008	695	1	0	0	1	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0009	695	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0010	695	1	0	0	1	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0011	600	1	0	0	0	0	1	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0012	695	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	a0013	453	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SAV1_chr14_50628580_50673306	1/1	a0001	383	389	100	78	155	14	40	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	a0002	383	1	0	0	1	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAXO1_chr9_18922650_19038209	0/1	a0001	474	159	12	31	80	11	24	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	1/0	a0002	474	93	4	17	61	3	7	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0003	474	62	42	4	9	0	7	copy fasta	SAXO1	chr9	18922650	19038209