JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP2B4_chr1_203621832_203749081	0/0	a0008	1205	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	a0009	1205	1	0	0	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2C1_chr3_130889084_131008150	1/1	a0001	919	374	83	60	181	14	34	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	a0002	919	4	4	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	a0003	919	2	2	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	a0004	919	1	0	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	a0005	919	1	1	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C2_chr16_84363538_84469187	1/0	a0001	946	240	45	45	120	7	22	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0002	946	144	30	26	63	5	20	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0003	946	8	0	3	4	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0004	946	6	6	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0005	946	3	0	1	0	1	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0006	946	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0007	946	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0008	946	2	0	0	0	0	2	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0009	946	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0010	946	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0011	946	2	0	2	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0012	946	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0013	946	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/1	a0014	946	1	0	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0015	946	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0016	946	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0017	946	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0018	946	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0019	946	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0020	946	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0021	946	1	0	0	0	1	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0022	946	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0023	946	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0024	946	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0025	946	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0026	946	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0027	946	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0028	946	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	a0029	946	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP4A_chr19_35545031_35568658	0/1	a0001	1035	279	92	50	85	11	40	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	1/0	a0002	1035	127	2	22	93	2	7	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0003	52	11	1	3	7	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0004	1035	2	0	1	0	0	1	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0005	1035	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0006	1035	1	1	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0007	1035	1	0	0	0	1	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0008	1035	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0009	1035	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0010	210	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	a0011	1035	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4B_chr13_113643804_113663198	1/1	a0001	291	422	71	83	202	16	48	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	a0002	291	24	17	4	3	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	a0003	291	5	5	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198