JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SBK2_chr19_55523611_55542133	0/0	a0012	348	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0013	348	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK3_chr19_55535656_55550543	1/1	a0001	359	389	93	70	164	14	46	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0002	359	32	1	1	30	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0003	359	7	0	4	0	2	1	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0004	359	3	0	2	0	0	1	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0005	359	3	0	1	0	2	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0006	359	1	0	0	1	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0007	359	1	1	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0008	359	1	0	0	1	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	a0009	359	1	1	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBNO1_chr12_123284109_123369847	1/0	a0001	1393	215	71	41	79	5	18	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/1	a0002	1393	31	6	14	0	3	7	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	a0003	1393	9	0	1	4	0	4	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	a0004	1393	3	3	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	a0005	1393	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	a0006	1393	1	0	0	0	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO2_chr19_1102638_1179268	0/0	a0000	0	14	2	2	10	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/1	a0001	1366	153	61	37	31	6	17	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0002	1366	25	1	9	10	2	3	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0003	1366	5	5	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0004	1366	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0005	1366	1	0	0	1	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0006	1366	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0007	1366	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0008	1366	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	a0009	1366	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBSN_chr19_35518367_35533311	0/0	a0001	590	195	14	28	127	8	18	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	1/0	a0002	590	136	33	27	58	4	13	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/1	a0003	662	59	14	18	16	2	8	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0004	572	12	0	7	0	2	3	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0005	590	10	10	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0006	590	6	6	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0007	590	5	5	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0008	590	3	3	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0009	572	3	3	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0010	662	2	0	1	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0011	572	2	0	2	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0012	590	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0013	536	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0014	662	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0015	590	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0016	590	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0017	590	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0018	590	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0019	590	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0020	662	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0021	662	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0022	734	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0023	590	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311