JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCARA5_chr8_27864883_27997673	0/0	a0003	495	11	10	1	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0004	495	7	0	5	2	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0005	495	4	4	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0006	495	2	0	0	2	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0007	495	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0008	495	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0009	495	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0010	291	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0011	495	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0012	495	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARB1_chr12_124771856_124868864	1/1	a0001	509	330	84	55	140	6	43	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	a0002	509	17	3	9	0	4	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	a0003	509	3	2	0	0	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	a0004	509	2	0	0	0	0	2	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	a0005	509	2	0	0	2	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	a0006	509	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	a0007	509	1	0	0	0	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB2_chr4_76153737_76218824	1/1	a0001	478	363	83	62	163	15	38	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0002	478	7	7	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0003	478	3	3	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0004	478	3	0	0	3	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0005	478	3	0	0	3	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0006	478	2	0	0	2	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0007	478	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0008	225	1	0	0	1	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	a0009	478	1	0	0	0	1	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARF1_chr17_1628858_1650732	0/1	a0001	830	248	28	41	145	9	24	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0002	830	31	2	6	9	3	11	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0003	830	27	10	1	16	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0004	830	20	1	17	0	2	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0005	830	14	14	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0006	830	7	7	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0007	830	6	6	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0008	830	6	6	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0009	830	5	5	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0010	831	4	0	0	0	0	4	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0011	830	4	4	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0012	831	3	1	0	0	0	2	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0013	831	2	2	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0014	830	2	0	2	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0015	830	2	0	0	0	0	2	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0016	830	2	2	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0017	831	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0018	831	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0019	831	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0020	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0021	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0022	830	1	0	1	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0023	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0024	830	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732