JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCARF1_chr17_1628858_1650732	0/0	a0025	830	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0026	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0027	830	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0028	830	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0029	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0030	830	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0031	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0032	830	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0033	830	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	a0034	830	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF2_chr22_20419584_20442825	0/1	a0001	866	107	18	16	63	3	6	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0002	866	105	20	16	41	5	23	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0003	866	77	30	23	14	5	5	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0004	866	59	1	6	35	5	12	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	1/0	a0005	866	42	21	8	10	0	2	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0006	866	3	0	3	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0007	866	2	0	2	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0008	866	1	1	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0009	866	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0010	866	1	1	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0011	866	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0012	860	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0013	866	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	a0014	866	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCART1_chr10_133448945_133474760	0/1	a0001	1027	186	22	40	85	12	26	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	1/0	a0002	1027	94	18	14	54	1	6	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0003	152	56	9	5	38	1	3	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0004	152	37	20	4	6	0	7	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0005	1027	5	0	2	0	0	3	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0006	1027	5	0	5	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0007	1027	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0008	1027	4	0	4	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0009	921	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0010	248	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0011	921	4	3	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0012	1027	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0013	1027	2	0	1	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0014	1027	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0015	1027	2	0	1	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0016	1027	2	0	0	2	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0017	1027	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0018	1027	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0019	1027	1	0	0	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0020	1027	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0021	921	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0022	1027	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0023	1027	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0024	1027	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0025	810	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0026	1027	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760