JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP4B_chr13_113643804_113663198	0/0	a0004	291	2	2	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	a0005	291	1	0	1	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	a0006	291	1	0	0	1	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	a0007	291	1	1	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP5F1A_chr18_46075248_46103296	1/1	a0001	553	380	84	62	171	18	43	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	a0002	553	7	7	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	a0003	553	2	1	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	a0004	553	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1B_chr12_56633175_56650984	1/1	a0001	529	363	92	68	154	16	31	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1B_chr12_56633175_56650984	0/0	a0002	529	25	0	0	22	0	3	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1B_chr12_56633175_56650984	0/0	a0003	529	2	0	0	2	0	0	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1C_chr10_7783177_7812801	1/1	a0001	298	419	83	74	200	16	44	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1C_chr10_7783177_7812801	0/0	a0002	298	1	1	0	0	0	0	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1D_chr19_1236751_1249825	1/1	a0001	168	409	96	80	171	16	44	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	a0002	168	2	2	0	0	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	a0003	168	1	0	0	1	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1E_chr20_59020475_59037335	1/1	a0001	51	401	89	78	170	16	46	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	a0002	51	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	a0003	51	1	0	0	0	0	1	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	a0004	51	1	0	0	0	0	1	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5IF1_chr1_28231124_28243100	1/1	a0001	106	359	90	78	139	12	38	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	a0002	106	1	0	0	1	0	0	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5MC1_chr17_48887787_48900871	1/1	a0001	136	334	90	60	134	12	36	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC2_chr12_53660170_53681083	1/1	a0001	141	418	98	80	182	12	44	copy fasta	ATP5MC2	chr12	53660170	53681083
ATP5MC3_chr2_175171258_175186710	1/1	a0001	142	387	84	70	172	16	43	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	a0002	142	2	0	0	2	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	a0003	142	1	0	0	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5ME_chr4_667436_679276	1/1	a0001	69	393	92	80	160	18	41	copy fasta	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	a0002	69	1	0	0	0	0	1	copy fasta	ATP5ME	chr4	667436	679276
ATP5MF_chr7_99453195_99471167	1/1	a0001	94	343	92	52	143	12	42	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	a0002	94	2	0	0	0	0	2	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	a0003	94	1	0	0	1	0	0	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MGL_chr22_42634803_42645601	1/1	a0001	100	368	86	72	148	10	50	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	a0002	100	5	5	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	a0003	100	1	1	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MG_chr11_118396606_118414847	1/1	a0001	103	334	86	38	158	14	36	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	a0002	103	1	0	0	0	0	1	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	a0003	103	1	0	0	0	0	1	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MJ_chr14_103907288_103926529	1/1	a0001	58	377	51	74	192	16	42	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	a0002	58	57	37	9	9	0	2	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	a0003	58	5	4	1	0	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	a0004	58	1	0	0	1	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MK_chr10_103384050_103401475	1/1	a0001	58	438	92	78	212	18	36	copy fasta	ATP5MK	chr10	103384050	103401475
ATP5PB_chr1_111444464_111467773	1/1	a0001	256	426	97	62	207	14	44	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	a0002	256	4	0	0	4	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	a0003	256	2	0	2	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	a0004	256	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	a0005	256	1	0	0	1	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PD_chr17_75033863_75051969	1/1	a0001	161	428	100	80	182	16	48	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PF_chr21_25719500_25739904	1/1	a0001	108	414	93	69	194	16	40	copy fasta	ATP5PF	chr21	25719500	25739904