JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCML2_chrX_18234313_18359688	0/0	a0002	700	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	a0003	700	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	a0004	700	1	0	1	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	a0005	45	1	0	0	1	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML4_chr6_107697154_107829313	1/0	a0001	414	217	84	31	79	5	17	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/1	a0002	414	31	4	13	5	1	7	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	a0003	414	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	a0004	414	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCN10A_chr3_38691807_38821217	0/0	a0001	1956	138	60	27	34	6	11	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0002	1956	79	12	9	46	4	8	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/1	a0003	1956	68	5	22	28	2	10	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0004	1956	28	0	1	25	0	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0005	1956	22	10	3	4	0	5	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0006	1956	3	0	0	3	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0007	1956	3	1	1	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0008	1956	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0009	1956	2	0	0	0	2	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0010	1956	2	0	0	0	0	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0011	1956	2	2	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0012	1956	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0013	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0014	1956	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0015	1956	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0016	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0017	1956	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0018	1956	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0019	1956	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	1/0	a0020	1956	1	0	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0021	1956	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0022	1956	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0023	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0024	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0025	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0026	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0027	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0028	1956	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0029	1956	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0030	1956	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0031	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0032	1956	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	a0033	1956	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN11A_chr3_38840764_39056944	1/1	a0001	1791	231	73	29	94	11	22	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0002	1791	38	12	2	23	0	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0003	1791	37	3	15	14	3	2	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0004	1791	2	0	1	0	0	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0005	1791	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0006	1791	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0007	1791	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0008	1791	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	a0009	1791	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944