JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCN11A_chr3_38840764_39056944	0/0	a0010	1791	1	0	1	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN1A_chr2_165980813_166133020	0/1	a0001	2009	293	74	54	140	5	19	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	1/0	a0002	2009	53	14	8	20	3	7	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0003	2009	2	1	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0004	2009	1	0	0	0	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0005	908	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0006	2009	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0007	2009	1	0	0	0	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0008	2009	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0009	2009	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0010	2009	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	a0011	2009	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1B_chr19_35025470_35045449	1/1	a0001	218	400	87	80	174	16	41	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	a0002	218	2	0	0	0	0	2	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	a0003	218	1	1	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	a0004	218	1	0	0	0	0	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN2A_chr2_165234414_165397304	1/1	a0001	2005	327	76	67	134	10	38	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	a0002	2005	28	0	6	18	2	2	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	a0003	2005	1	0	0	1	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	a0004	2005	1	0	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	a0005	2005	1	0	0	1	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2B_chr11_118157806_118181639	1/1	a0001	215	449	96	80	206	18	47	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	a0002	215	1	0	0	0	0	1	copy fasta	SCN2B	chr11	118157806	118181639
SCN3A_chr2_165082526_165209050	1/1	a0001	2000	277	75	42	116	10	32	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0002	1999	13	6	2	0	2	3	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0003	2000	8	0	7	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0004	2000	5	0	0	5	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0005	2000	2	0	1	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0006	2000	2	0	0	2	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0007	2000	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0008	2000	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0009	2000	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0010	2000	1	0	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0011	2000	1	0	0	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0012	2000	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	a0013	2000	1	0	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3B_chr11_123624188_123659624	1/1	a0001	215	449	98	82	203	16	48	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	a0002	215	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN4A_chr17_63933554_63977918	0/0	a0001	1836	170	57	28	65	10	10	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/1	a0002	1836	122	16	29	56	4	16	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	1/0	a0003	1836	19	10	5	0	1	2	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0004	1836	6	0	1	4	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0005	1836	6	0	1	5	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0006	1836	6	5	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0007	1836	4	0	0	4	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0008	1836	2	1	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0009	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0010	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0011	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0012	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918