JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCN9A_chr2_166190185_166380944	0/0	a0020	1988	1	0	0	0	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0021	1988	1	0	0	0	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0022	1988	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0023	1988	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0024	1988	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0025	1988	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0026	1988	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0027	1988	1	0	0	0	1	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0028	1988	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0029	1988	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0030	1988	1	0	1	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCNM1_chr1_151161144_151175296	1/1	a0001	230	367	91	72	148	15	39	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	a0002	230	7	7	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	a0003	230	3	0	0	0	1	2	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	a0004	230	1	0	0	0	0	1	copy fasta	SCNM1	chr1	151161144	151175296
SCNN1A_chr12_6341847_6380563	0/1	a0001	669	239	50	59	89	10	30	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	1/0	a0002	669	102	4	13	72	3	9	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0003	669	65	31	5	25	0	4	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0004	669	13	2	0	11	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0005	669	10	0	3	7	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0006	669	8	8	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0007	669	5	0	3	0	1	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0008	669	2	0	1	0	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0009	669	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0010	669	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0011	669	1	0	0	0	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0012	669	1	0	0	0	1	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0013	669	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0014	669	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0015	669	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0016	669	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0017	669	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	a0018	669	1	0	0	0	1	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1B_chr16_23297302_23386294	1/1	a0001	640	289	72	54	107	16	38	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	a0002	640	9	8	1	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	a0003	640	4	4	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	a0004	640	1	0	1	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	a0005	640	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	a0006	640	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	a0007	640	1	0	0	1	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1D_chr1_1275436_1297025	1/1	a0001	802	99	17	38	21	11	10	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0002	802	96	14	14	53	1	14	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0003	802	30	3	3	23	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0004	802	11	8	3	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0005	802	7	5	2	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0006	802	6	0	2	4	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0007	802	5	4	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0008	802	5	5	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0009	802	4	0	0	3	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0010	802	3	1	0	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025