JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCNN1D_chr1_1275436_1297025	0/0	a0011	125	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0012	802	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0013	802	2	0	0	1	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0014	802	2	2	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0015	796	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0016	802	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0017	802	1	0	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0018	802	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0019	802	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0020	588	1	0	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0021	802	1	0	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0022	802	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0023	802	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0024	802	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0025	802	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0026	580	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0027	802	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0028	802	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0029	134	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	a0030	802	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1G_chr16_23177745_23221883	1/1	a0001	649	311	86	70	97	14	42	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	a0002	649	4	4	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	a0003	649	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	a0004	649	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	a0005	649	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	a0006	649	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	a0007	649	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCO1_chr17_10667474_10702533	1/1	a0001	301	378	55	75	192	14	40	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	a0002	301	36	33	3	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	a0003	301	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	a0004	301	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO2_chr22_50518568_50530598	0/1	a0001	266	267	67	47	116	7	29	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	1/0	a0002	266	137	27	31	58	9	11	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	a0003	266	2	0	0	0	0	2	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	a0004	266	2	2	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	a0005	266	1	1	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	a0006	266	1	1	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCOC_chr4_140368646_140390728	1/1	a0001	82	418	94	80	182	16	44	copy fasta	SCOC	chr4	140368646	140390728
SCP2D1_chr20_18808783_18819378	1/1	a0001	156	367	57	71	185	17	35	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	a0002	156	83	39	15	15	1	13	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	a0003	156	2	0	2	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	a0004	156	1	1	0	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	a0005	119	1	1	0	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2_chr1_52922276_53056698	1/1	a0001	547	280	88	42	120	6	22	copy fasta	SCP2	chr1	52922276	53056698
SCPEP1_chr17_56973131_57011768	1/1	a0001	452	373	96	70	151	14	40	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	a0002	452	3	0	0	3	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	a0003	452	2	0	0	2	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	a0004	452	1	1	0	0	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	a0005	452	1	1	0	0	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCRG1_chr4_173379701_173404116	1/1	a0001	98	379	98	66	159	14	40	copy fasta	SCRG1	chr4	173379701	173404116