JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCRG1_chr4_173379701_173404116	0/0	a0002	61	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRIB_chr8_143785925_143820773	0/0	a0001	1655	164	41	36	48	11	28	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0002	1655	135	30	20	73	6	6	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0003	1655	27	10	1	12	0	4	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/1	a0004	1655	8	0	1	4	0	2	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0005	1463	6	1	4	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0006	1655	5	0	4	0	1	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0007	1655	4	0	0	4	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0008	1655	3	0	0	3	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0009	1655	3	0	0	3	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0010	1463	3	0	1	1	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0011	1655	2	1	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0012	1655	2	0	0	2	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0013	1655	2	0	2	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0014	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0015	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0016	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0017	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0018	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0019	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0020	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0021	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0022	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0023	1655	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0024	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0025	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0026	1655	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0027	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0028	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0029	1655	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0030	1463	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0031	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0032	1655	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0033	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0034	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0035	1655	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	a0036	1655	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRN1_chr7_29915109_29994801	1/1	a0001	414	237	64	51	85	13	22	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	a0002	414	32	11	3	17	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	a0003	414	2	1	0	0	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	a0004	414	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	a0005	414	1	0	0	0	1	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	a0006	414	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN2_chr17_47832692_47846273	0/1	a0001	425	349	78	63	151	14	42	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	1/0	a0002	425	18	0	15	1	1	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0003	425	8	6	1	1	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0004	425	6	5	1	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0005	425	4	2	1	0	1	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0006	425	3	3	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0007	425	2	0	0	0	0	2	copy fasta	SCRN2	chr17	47832692	47846273