JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCRN2_chr17_47832692_47846273	0/0	a0008	425	2	2	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0009	425	2	2	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0010	425	2	1	1	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0011	425	1	0	0	1	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	a0012	425	1	1	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN3_chr2_174390730_174434575	0/1	a0000	0	88	5	15	45	7	15	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	1/0	a0001	424	238	83	39	80	7	28	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0002	424	29	1	21	0	4	3	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0003	424	3	0	2	0	0	1	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0004	424	2	0	0	2	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0005	424	1	0	0	1	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0006	424	1	0	1	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0007	424	1	1	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	a0008	424	1	0	0	0	0	1	copy fasta	SCRN3	chr2	174390730	174434575
SCRT1_chr8_144325565_144341482	1/1	a0001	348	381	87	76	156	18	42	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	a0002	348	16	5	4	4	0	3	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	a0003	348	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT2_chr20_656596_680802	1/1	a0001	307	450	94	80	213	15	46	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	a0002	307	6	1	2	0	1	2	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	a0003	307	1	0	0	1	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	a0004	307	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCTR_chr2_119434843_119529483	1/1	a0001	440	272	83	57	88	9	33	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0002	440	4	0	3	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0003	440	3	2	1	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0004	440	2	0	0	2	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0005	440	2	0	0	0	0	2	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0006	440	1	0	0	1	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0007	440	1	1	0	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0008	440	1	0	1	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0009	440	1	0	0	0	1	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0010	440	1	0	0	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0011	440	1	0	0	1	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	a0012	440	1	0	0	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCT_chr11_621309_632181	0/1	a0001	121	406	96	80	165	16	48	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	a0002	122	3	1	0	2	0	0	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	a0003	121	1	0	0	1	0	0	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	a0004	121	1	1	0	0	0	0	copy fasta	SCT	chr11	621309	632181
SCUBE1_chr22_43192280_43348372	0/0	a0001	988	92	35	30	8	4	15	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/1	a0002	988	79	28	7	33	3	7	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	1/0	a0003	988	69	3	21	33	4	7	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0004	988	9	3	4	0	1	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0005	988	8	7	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0006	988	4	0	0	4	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0007	988	3	3	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0008	988	3	0	0	3	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0009	988	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0010	988	2	0	0	2	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0011	988	2	0	2	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0012	988	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0013	988	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372