JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCUBE1_chr22_43192280_43348372	0/0	a0014	988	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0015	988	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0016	988	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0017	988	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	a0018	988	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE2_chr11_9014476_9096599	1/0	a0001	1028	100	7	20	57	6	9	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/1	a0002	1027	76	16	18	34	2	5	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0003	1027	72	43	18	0	3	8	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0004	1028	23	1	3	13	2	4	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0005	1027	21	1	1	17	0	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0006	1027	20	5	1	7	0	7	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0007	1028	12	1	1	7	1	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0008	1027	9	6	0	3	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0009	1028	3	3	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0010	1027	3	1	1	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0011	1028	2	0	0	2	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0012	1028	2	0	0	2	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0013	1027	2	0	2	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0014	1028	1	0	0	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0015	1028	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0016	1028	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0017	1028	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0018	1028	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0019	1027	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0020	1027	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0021	1027	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0022	1027	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0023	1003	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0024	1027	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0025	1027	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	a0026	1027	1	0	0	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE3_chr6_35208956_35258079	1/1	a0001	993	266	75	52	101	8	28	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0002	993	8	0	0	8	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0003	993	8	0	0	8	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0004	993	3	1	2	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0005	993	2	2	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0006	993	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0007	993	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	a0008	993	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCX_chr8_144261453_144273481	1/1	a0001	201	433	99	80	190	18	44	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	a0002	200	4	0	0	4	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	a0003	201	1	1	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	a0004	201	1	0	1	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	a0005	201	1	0	1	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCYGR1_chr2_227382683_227392949	1/1	a0001	88	252	43	53	113	13	28	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0002	91	133	19	18	77	2	17	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0003	85	40	23	4	12	0	1	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0004	95	14	0	3	8	1	2	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0005	88	7	7	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0006	91	3	3	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949