JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP5PF_chr21_25719500_25739904	0/0	a0002	108	2	1	1	0	0	0	copy fasta	ATP5PF	chr21	25719500	25739904
ATP5PO_chr21_33898453_33920804	1/1	a0001	213	417	87	72	201	18	37	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	a0002	213	16	8	4	1	0	3	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	a0003	213	1	0	1	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	a0004	213	1	1	0	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	a0005	213	1	0	1	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP6AP1_chrX_154423677_154441516	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	1/1	a0001	470	273	53	60	120	9	29	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0002	472	13	12	1	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0003	472	8	7	1	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0004	470	3	3	0	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0005	473	1	1	0	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0006	406	1	0	0	0	0	1	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0007	470	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	a0008	96	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP2_chrX_40575970_40611848	1/1	a0001	350	285	70	48	135	9	21	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	a0002	350	5	0	4	0	0	1	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	a0003	350	5	5	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	a0004	350	2	0	2	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	a0005	136	1	0	0	1	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	a0006	350	1	1	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6V0A1_chr17_42453878_42527579	1/1	a0001	837	316	88	65	114	12	35	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	a0002	837	1	1	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	a0003	837	1	0	0	0	0	1	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	a0004	837	1	1	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	a0005	837	1	0	1	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A2_chr12_123707353_123766755	1/1	a0001	856	199	74	37	45	8	33	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0002	856	12	9	3	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0003	856	3	3	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0004	856	2	0	0	0	2	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0005	856	1	0	0	0	0	1	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0006	856	1	0	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0007	856	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0008	856	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0009	856	1	0	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	a0010	856	1	0	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A4_chr7_138701294_138803196	0/0	a0001	840	204	55	36	72	10	31	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	1/1	a0002	840	101	12	21	52	5	9	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0003	840	23	10	1	4	2	6	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0004	840	14	5	0	8	1	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0005	840	13	2	1	10	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0006	840	6	1	5	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0007	840	5	3	0	2	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0008	840	2	0	2	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0009	840	2	2	0	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0010	840	1	0	1	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0011	840	1	0	0	1	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0012	840	1	0	0	1	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0013	840	1	0	1	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	a0014	840	1	0	0	1	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196