JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCYGR1_chr2_227382683_227392949	0/0	a0007	85	2	2	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0008	88	1	0	0	0	0	1	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0009	88	1	1	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	a0010	88	1	0	0	0	0	1	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR2_chr2_227593893_227604255	0/0	a0001	120	144	28	23	66	8	19	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0002	124	127	35	22	62	3	5	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/1	a0003	108	93	6	9	63	2	12	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0004	108	31	13	7	11	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0005	104	26	0	8	9	1	8	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0006	120	18	0	8	8	1	1	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0007	122	5	4	1	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0008	121	4	4	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0009	132	3	3	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0010	128	3	3	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0011	104	3	0	3	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0012	124	2	0	2	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0013	120	2	0	0	2	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0014	116	2	0	1	1	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0015	120	2	2	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0016	104	2	0	0	0	1	1	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0017	136	1	1	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	a0018	104	1	1	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR3_chr2_227609538_227619840	0/0	a0001	100	324	54	50	169	10	41	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	a0002	100	97	7	24	53	4	9	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	a0003	96	36	35	1	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	a0004	96	3	2	1	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	a0005	104	2	2	0	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR4_chr2_227612498_227622815	1/1	a0001	105	381	69	67	190	11	42	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	a0002	97	31	23	2	1	0	5	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	a0003	105	24	5	3	14	1	1	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	a0004	101	18	0	0	13	3	2	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	a0005	105	2	2	0	0	0	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	a0006	105	1	0	0	0	1	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	a0007	105	1	1	0	0	0	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR5_chr2_227661804_227672061	1/1	a0001	85	351	60	52	184	13	40	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0002	85	30	4	10	6	1	9	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0003	85	29	5	10	14	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0004	85	26	12	10	0	3	1	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0005	96	15	13	2	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0006	85	3	0	0	3	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0007	85	1	1	0	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0008	85	1	0	0	1	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0009	68	1	0	0	0	1	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0010	85	1	0	1	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0011	56	1	0	1	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	a0012	85	1	1	0	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR6_chr2_227719440_227729757	0/0	a0001	105	341	63	72	163	14	29	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/1	a0002	99	41	22	0	18	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0003	105	36	1	9	9	2	15	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0004	111	16	0	0	16	0	0	copy fasta	SCYGR6	chr2	227719440	227729757