JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCYGR6_chr2_227719440_227729757	0/0	a0005	105	7	7	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0006	99	3	0	1	1	0	1	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0007	109	2	2	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0008	121	2	1	1	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0009	105	2	0	0	2	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0010	123	2	0	0	2	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0011	123	1	0	0	0	0	1	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0012	111	1	0	1	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	a0013	105	1	0	0	1	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR7_chr2_227723335_227733625	1/1	a0001	96	233	34	31	145	8	13	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0002	96	72	8	12	24	3	25	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0003	96	53	23	14	8	4	4	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0004	96	44	8	5	30	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0005	96	15	2	11	0	0	2	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0006	96	10	9	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0007	95	6	5	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0008	96	5	0	5	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0009	118	3	0	0	3	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0010	96	3	0	2	0	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0011	92	2	0	0	1	1	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0012	95	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0013	125	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0014	96	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0015	96	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0016	76	1	0	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0017	96	1	0	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0018	96	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0019	96	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0020	88	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	a0021	89	1	0	0	1	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR8_chr2_227740894_227751220	0/1	a0001	103	311	67	43	175	8	17	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0002	103	76	4	23	20	7	22	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0003	108	31	3	8	13	1	6	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0004	95	20	0	6	11	0	3	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0005	108	14	14	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0006	108	3	3	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0007	103	1	1	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	a0008	99	1	0	0	1	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYL1_chr11_65520083_65543704	1/1	a0001	808	274	84	43	105	10	30	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	a0002	814	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	a0003	808	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	a0004	808	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	a0005	808	1	0	0	1	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL2_chr12_100262177_100346715	1/0	a0001	929	203	72	36	60	12	22	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	a0002	929	8	0	0	8	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/1	a0003	929	3	1	1	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	a0004	929	2	0	1	0	1	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	a0005	929	1	0	0	0	1	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	a0006	929	1	1	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	a0007	929	1	0	0	1	0	0	copy fasta	SCYL2	chr12	100262177	100346715