JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SDF4_chr1_1211931_1237001	0/0	a0004	355	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDHAF1_chr19_35990188_36001312	0/1	a0001	115	391	96	76	162	10	46	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	1/0	a0002	115	1	0	0	0	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF2_chr11_61425124_61451733	1/1	a0001	166	238	90	46	62	8	30	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF3_chr7_97112698_97186763	1/1	a0001	125	398	93	75	174	14	40	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	a0002	125	3	0	1	0	0	2	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	a0003	125	1	1	0	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF4_chr6_70561930_70594569	1/1	a0001	108	270	61	48	118	12	29	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	a0002	108	90	33	18	29	4	6	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	a0003	108	7	0	3	4	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	a0004	108	2	0	1	0	0	1	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	a0005	108	1	0	0	1	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHA_chr5_213320_262082	1/1	a0001	664	244	9	49	133	12	39	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0002	664	6	0	3	2	0	1	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0003	664	4	0	0	4	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0004	664	4	4	0	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0005	664	4	0	2	0	0	2	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0006	664	2	0	0	2	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0007	664	1	0	0	1	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	a0008	664	1	1	0	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHB_chr1_17013722_17059032	1/1	a0001	280	354	83	63	164	13	29	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	a0002	280	8	8	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	a0003	280	3	0	1	0	1	1	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	a0004	280	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	a0005	280	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	a0006	280	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHC_chr1_161309381_161368206	1/1	a0001	169	329	88	46	141	12	40	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	a0002	169	1	0	0	1	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHD_chr11_112081873_112100794	1/1	a0001	159	382	96	73	167	12	32	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	a0002	159	3	0	3	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	a0003	159	2	0	2	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	a0004	159	1	0	0	1	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDK1_chr7_3296252_4274000	0/0	a0001	2213	47	33	8	0	2	4	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0002	2213	15	8	2	1	0	4	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0003	2213	6	1	2	1	1	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0004	2213	5	3	2	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0005	2213	5	2	1	2	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0006	2213	3	0	1	0	0	2	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0007	2213	3	0	2	0	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0008	2213	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0009	2213	2	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0010	2213	2	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0011	2213	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0012	2213	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0013	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0014	2213	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0015	2213	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0016	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0017	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0018	2213	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000