JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SDK1_chr7_3296252_4274000	0/0	a0019	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0020	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0021	2213	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0022	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0023	2213	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0024	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0025	2213	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0026	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0027	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0028	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0029	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0030	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0031	2213	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0032	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0033	2213	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0034	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	a0035	2213	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK2_chr17_73329384_73649445	1/1	a0001	2172	115	44	18	31	3	17	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0002	2172	19	2	10	1	0	6	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0003	2172	13	1	2	7	1	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0004	2172	12	8	2	1	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0005	2172	8	6	2	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0006	2172	4	2	0	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0007	2172	4	3	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0008	2172	4	4	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0009	2172	3	0	0	2	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0010	2172	2	0	0	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0011	2172	2	0	0	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0012	2172	2	0	0	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0013	2172	2	0	0	0	1	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0014	2172	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0015	2172	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0016	2172	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0017	2172	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0018	2172	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0019	2172	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0020	2172	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0021	2172	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0022	2172	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0023	2172	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0024	2172	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0025	2172	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0026	2172	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	a0027	2172	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDR16C5_chr8_56295005_56325175	1/1	a0001	309	392	92	82	166	10	40	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	a0002	309	5	2	0	3	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	a0003	300	1	0	0	1	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR39U1_chr14_24434766_24447776	0/1	a0001	293	330	32	65	179	14	39	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	1/0	a0002	293	78	57	6	8	2	4	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	a0003	293	48	0	4	42	0	2	copy fasta	SDR39U1	chr14	24434766	24447776