JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SDR39U1_chr14_24434766_24447776	0/0	a0004	293	3	0	0	3	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	a0005	293	1	0	1	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	a0006	293	1	1	0	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	a0007	293	1	0	0	0	0	1	copy fasta	SDR39U1	chr14	24434766	24447776
SDR42E1_chr16_81983855_82016470	1/1	a0001	393	313	35	64	158	16	38	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0002	393	40	28	5	7	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0003	393	25	24	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0004	29	14	1	5	0	1	7	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0005	393	11	0	0	11	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0006	393	8	8	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0007	393	2	0	0	2	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0008	393	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0009	393	1	0	0	0	0	1	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0010	393	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0011	393	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0012	393	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0013	393	1	0	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	a0014	393	1	0	0	0	1	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E2_chr16_22157506_22196751	0/0	a0001	422	196	66	21	85	3	21	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	1/1	a0002	422	78	11	26	24	3	12	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0003	422	74	9	13	45	0	7	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0004	422	2	0	2	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0005	422	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0006	422	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0007	422	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0008	422	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0009	422	1	0	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	a0010	422	1	0	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR9C7_chr12_56918133_56939408	1/1	a0001	313	413	80	69	211	16	35	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0002	313	6	6	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0003	313	6	6	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0004	313	1	1	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0005	313	1	0	1	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0006	313	1	0	0	0	0	1	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0007	313	1	0	0	1	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	a0008	313	1	1	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDSL_chr12_113417380_113443276	1/1	a0001	329	273	84	55	93	16	23	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0002	329	14	0	14	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0003	329	3	0	1	0	0	2	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0004	329	2	1	0	0	0	1	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0005	329	2	0	0	2	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0006	122	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0007	329	1	0	0	1	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0008	329	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	a0009	329	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDS_chr12_113387445_113408887	1/1	a0001	328	342	87	68	132	18	35	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	a0002	328	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	a0003	328	1	0	0	0	0	1	copy fasta	SDS	chr12	113387445	113408887
SEBOX_chr17_28358506_28370199	0/1	a0001	190	343	87	63	144	12	36	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	1/0	a0002	190	36	1	19	1	4	10	copy fasta	SEBOX	chr17	28358506	28370199