JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEBOX_chr17_28358506_28370199	0/0	a0003	190	2	2	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	a0004	190	2	2	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	a0005	190	1	1	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	a0006	190	1	1	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	a0007	190	1	0	0	1	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEC11A_chr15_84664544_84721139	1/1	a0001	179	320	92	66	114	12	34	copy fasta	SEC11A	chr15	84664544	84721139
SEC11C_chr18_59134884_59163832	1/1	a0001	192	444	98	76	218	8	42	copy fasta	SEC11C	chr18	59134884	59163832
SEC13_chr3_10295931_10326112	1/1	a0001	322	378	96	61	159	10	50	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	a0002	322	1	0	0	1	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	a0003	322	1	0	1	0	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC14L1_chr17_77135969_77222101	0/1	a0001	715	413	78	77	198	14	45	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	1/0	a0002	715	8	7	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0003	715	2	2	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0004	715	2	0	0	0	0	2	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0005	715	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0006	715	1	0	0	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0007	715	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0008	715	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	a0009	715	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L2_chr22_30392018_30430303	1/1	a0001	403	251	51	49	107	11	31	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	a0002	403	160	36	31	73	7	13	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	a0003	403	7	7	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	a0004	62	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	a0005	403	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L3_chr22_30454229_30477017	0/0	a0001	400	183	38	21	93	3	28	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	1/0	a0002	400	84	10	33	23	8	9	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/1	a0003	400	78	19	9	43	0	6	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0004	400	69	23	11	28	4	3	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0005	400	27	0	5	19	2	1	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0006	400	4	4	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0007	400	2	1	1	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0008	400	2	0	2	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0009	400	2	0	0	0	1	1	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0010	400	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0011	400	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	a0012	400	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L4_chr22_30483902_30510695	1/1	a0001	406	338	55	52	177	11	41	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0002	406	43	3	23	5	6	6	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0003	406	13	12	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0004	133	13	13	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0005	406	6	6	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0006	406	6	5	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0007	406	2	0	0	0	1	1	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0008	133	1	0	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0009	406	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	a0010	406	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L5_chr16_4953330_5024157	1/1	a0001	696	365	92	69	146	18	38	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0002	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0003	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0004	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157