JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEC14L5_chr16_4953330_5024157	0/0	a0005	425	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0006	696	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0007	696	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0008	696	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0009	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0010	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0011	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	a0012	696	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L6_chr22_30517799_30551741	0/1	a0001	397	253	64	43	107	5	33	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0002	397	85	12	15	44	2	12	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0003	397	22	6	8	1	7	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	1/0	a0004	397	14	0	11	0	0	2	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0005	397	5	0	0	5	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0006	397	5	4	1	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0007	397	3	0	0	3	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0008	397	2	0	0	0	1	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0009	397	2	0	0	0	0	2	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0010	397	2	0	0	2	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0011	397	2	0	2	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	a0012	397	1	0	0	0	1	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC16A_chr9_136435105_136488040	1/1	a0001	2357	210	60	42	71	12	23	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0002	2357	31	4	13	8	3	3	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0003	2357	12	10	2	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0004	2357	8	7	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0005	2357	6	0	4	0	1	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0006	2357	4	3	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0007	2357	2	0	0	2	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0008	2357	2	1	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0009	2357	2	0	1	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0010	2357	2	0	0	0	0	2	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0011	2357	2	0	0	1	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0012	2357	2	2	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0013	2357	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0014	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0015	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0016	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0017	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0018	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0019	2357	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0020	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0021	2357	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0022	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0023	2357	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0024	2357	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0025	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0026	2357	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0027	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0028	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0029	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0030	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040