JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEC16A_chr9_136435105_136488040	0/0	a0031	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0032	2357	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0033	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0034	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	a0035	2357	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16B_chr1_177923788_177975058	0/0	a0001	1060	119	25	26	41	7	20	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0002	1060	68	15	13	27	4	9	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/1	a0003	1060	68	15	13	33	1	5	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0004	1060	57	3	9	40	0	5	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0005	1060	13	10	3	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0006	1060	11	0	0	10	1	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0007	1060	10	1	5	3	0	1	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	1/0	a0008	1060	9	2	1	5	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0009	1071	7	0	1	6	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0010	1060	3	3	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0011	1060	3	2	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0012	1060	3	2	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0013	1060	2	2	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0014	1071	2	0	0	2	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0015	1060	2	0	0	1	0	1	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0016	1060	2	0	0	2	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0017	1060	2	0	0	2	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0018	1060	2	2	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0019	1060	2	2	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0020	1060	2	1	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0021	1060	2	0	0	2	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0022	1060	2	0	1	0	1	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0023	1071	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0024	1060	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0025	1071	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0026	1071	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0027	1060	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0028	1060	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0029	1060	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0030	1060	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0031	1060	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0032	1060	1	0	0	0	0	1	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0033	1060	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0034	1060	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0035	1060	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0036	1060	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0037	1060	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0038	1060	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	a0039	1060	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC22A_chr3_123196943_123279136	1/1	a0001	307	337	77	54	142	16	46	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	a0002	307	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	a0003	307	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	a0004	307	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22B_chr1_120145898_120181520	1/1	a0001	215	379	94	58	169	14	42	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	a0002	215	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520