JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP6V0A4_chr7_138701294_138803196	0/0	a0015	840	1	0	0	1	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0B_chr1_43969960_43983295	1/1	a0001	205	395	92	68	187	12	34	copy fasta	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	a0002	205	1	0	0	1	0	0	copy fasta	ATP6V0B	chr1	43969960	43983295
ATP6V0C_chr16_2508952_2525218	1/1	a0001	155	336	94	72	126	6	36	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0D1_chr16_67433019_67486157	1/1	a0001	351	174	88	26	32	6	20	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D2_chr8_86093910_86159225	1/1	a0001	350	344	77	61	154	6	44	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	a0002	350	9	8	1	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	a0003	350	3	3	0	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	a0004	350	1	1	0	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	a0005	350	1	0	0	1	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	a0006	350	1	0	0	1	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	a0007	350	1	1	0	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0E1_chr5_172978771_173040445	0/0	a0001	81	292	88	58	98	10	38	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E2_chr7_149868969_149885695	1/1	a0001	81	437	94	80	197	18	46	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/0	a0002	81	1	0	0	1	0	0	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V1A_chr3_113742035_113817056	1/1	a0001	617	312	74	52	140	14	30	copy fasta	ATP6V1A	chr3	113742035	113817056
ATP6V1B1_chr2_70930900_70970431	1/0	a0001	513	217	55	47	85	6	23	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/1	a0002	511	142	34	16	76	2	13	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0003	513	70	10	19	36	2	3	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0004	511	4	0	0	0	0	4	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0005	511	2	0	0	2	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0006	513	1	0	0	1	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0007	511	1	0	0	0	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0008	511	1	0	0	0	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0009	511	1	1	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	a0010	511	1	0	0	0	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B2_chr8_20192381_20226696	1/1	a0001	511	398	94	67	174	17	44	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	a0002	511	2	0	1	0	1	0	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	a0003	511	2	2	0	0	0	0	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1C1_chr8_103016083_103078051	1/1	a0001	382	410	89	62	197	18	42	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	a0002	382	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	a0003	382	1	0	0	1	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C2_chr2_10716630_10790110	0/0	a0001	427	175	29	28	93	5	20	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	1/1	a0002	427	172	58	41	44	5	22	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	a0003	427	3	1	2	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	a0004	427	1	0	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	a0005	427	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	a0006	427	1	0	0	1	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	a0007	427	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1D_chr14_67332872_67364804	1/1	a0001	247	348	88	72	150	8	28	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1E1_chr22_17587136_17633749	1/1	a0001	226	363	95	68	145	14	39	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	a0002	226	5	0	0	4	0	1	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	a0003	226	1	1	0	0	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	a0004	226	1	0	0	1	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E2_chr2_46506847_46547577	1/1	a0001	226	403	87	78	176	16	44	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	a0002	226	2	0	0	2	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	a0003	226	2	2	0	0	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	a0004	226	1	0	0	1	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	a0005	226	1	0	0	1	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	a0006	226	1	1	0	0	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577