JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEC22C_chr3_42542969_42586967	1/1	a0001	303	392	94	70	164	16	46	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	a0002	303	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	a0003	303	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC23A_chr14_39026919_39108235	0/0	a0001	765	268	79	50	101	11	27	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	1/1	a0002	765	97	15	17	53	5	5	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	a0003	765	1	0	1	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23B_chr20_18502940_18566415	1/1	a0001	767	337	81	54	157	12	31	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0002	767	37	5	10	22	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0003	767	18	2	9	0	2	5	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0004	767	4	0	0	0	1	3	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0005	767	3	0	0	0	0	3	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0006	767	2	2	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0007	767	2	2	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0008	767	2	0	0	2	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0009	767	1	0	1	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0010	767	1	0	1	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0011	767	1	0	0	0	1	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0012	767	1	0	1	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	a0013	767	1	0	0	1	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23IP_chr10_119887730_119949657	0/1	a0001	1000	286	58	53	136	9	29	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	1/0	a0002	1000	88	16	22	34	5	10	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0003	1000	7	7	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0004	1000	5	5	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0005	1000	3	0	0	3	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0006	1000	3	2	1	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0007	1000	2	0	0	0	2	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0008	1000	1	1	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0009	1000	1	0	0	0	0	1	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0010	1000	1	1	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0011	1000	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0012	1000	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	a0013	1000	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC24A_chr5_134643785_134732909	1/1	a0001	1093	297	71	44	135	14	31	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0002	1093	6	0	0	6	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0003	1093	4	4	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0004	1093	3	2	1	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0005	1093	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0006	1093	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0007	1093	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0008	1093	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0009	1093	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0010	1093	1	0	0	0	0	1	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0011	1093	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	a0012	1093	1	0	1	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24B_chr4_109428815_109545896	1/1	a0001	1268	210	76	43	63	4	22	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0002	1268	3	0	0	2	0	1	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0003	1268	2	0	0	2	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0004	1268	2	1	1	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0005	1268	1	0	0	0	0	1	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0006	1268	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896