JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEC24B_chr4_109428815_109545896	0/0	a0007	1268	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0008	1268	1	0	0	1	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	a0009	1268	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24C_chr10_73739372_73777161	1/1	a0001	1094	308	67	39	150	12	38	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0002	1094	2	0	2	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0003	1094	2	2	0	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0004	1094	2	0	0	2	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0005	1094	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0006	1094	1	1	0	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0007	1094	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0008	1094	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0009	1094	1	0	1	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0010	1094	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0011	1094	1	0	0	0	0	1	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	a0012	1094	1	0	0	0	0	1	copy fasta	SEC24C	chr10	73739372	73777161
SEC24D_chr4_118717823_118841126	1/1	a0001	1032	279	49	56	132	12	28	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0002	1032	4	4	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0003	1032	3	2	1	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0004	1032	2	2	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0005	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0006	1032	1	0	0	1	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0007	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0008	1032	1	0	1	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0009	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0010	1032	1	0	0	1	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0011	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0012	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0013	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0014	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0015	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	a0016	1032	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC31A_chr4_82813509_82896153	1/1	a0001	1220	309	67	44	154	8	34	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0002	1220	6	6	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0003	1220	4	4	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0004	1220	2	2	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0005	1220	1	0	0	1	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0006	1220	1	0	1	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0007	1220	1	0	0	1	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0008	1220	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0009	1220	1	0	1	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0010	1220	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	a0011	1220	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31B_chr10_100481647_100524861	1/0	a0001	1179	187	50	37	73	9	17	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/1	a0002	1179	54	8	8	29	4	4	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0003	1179	10	0	0	10	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0004	1179	8	8	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0005	1179	6	0	5	0	0	1	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0006	1179	6	1	2	3	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0007	1179	6	3	1	1	1	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0008	1179	3	3	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861