JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEC31B_chr10_100481647_100524861	0/0	a0009	1179	3	3	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0010	1179	2	2	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0011	1179	2	2	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0012	1179	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0013	1179	1	0	1	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0014	1179	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0015	1179	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0016	1179	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0017	1179	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0018	1179	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0019	1179	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0020	1179	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0021	1179	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	a0022	1179	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC61A1_chr3_128047437_128076683	1/1	a0001	476	381	86	74	164	13	42	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	a0002	476	1	0	0	0	1	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A2_chr10_12124677_12170407	1/1	a0001	476	360	80	68	162	12	36	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61B_chr9_99217282_99235615	1/1	a0001	96	349	88	69	132	18	40	copy fasta	SEC61B	chr9	99217282	99235615
SEC61B_chr9_99217282_99235615	0/0	a0002	40	1	0	1	0	0	0	copy fasta	SEC61B	chr9	99217282	99235615
SEC61G_chr7_54747253_54764211	1/1	a0001	68	406	88	70	182	18	46	copy fasta	SEC61G	chr7	54747253	54764211
SEC62_chr3_169961807_170003373	1/1	a0001	399	328	92	46	142	6	40	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	a0002	399	6	0	0	6	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	a0003	399	2	0	2	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC63_chr6_107862756_107963208	1/1	a0001	760	328	92	56	146	9	23	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	a0002	760	2	0	0	0	0	2	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	a0003	760	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	a0004	760	1	0	0	0	1	0	copy fasta	SEC63	chr6	107862756	107963208
SECISBP2L_chr15_48983638_49051446	1/1	a0001	1101	292	82	41	128	11	28	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0002	1101	69	3	12	30	5	19	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0003	1101	11	5	4	0	2	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0004	1101	2	0	0	0	0	2	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0005	1101	1	1	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0006	1101	1	0	0	0	0	1	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0007	1101	1	0	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	a0008	1101	1	1	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2_chr9_89313500_89364663	1/1	a0001	854	372	87	70	163	12	38	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	a0002	854	2	0	2	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	a0003	854	2	2	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	a0004	854	1	0	0	0	0	1	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	a0005	854	1	1	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	a0006	854	1	0	0	0	0	1	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	a0007	854	1	0	0	1	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECTM1_chr17_82316024_82338766	1/1	a0001	248	340	77	66	141	18	36	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0002	248	19	9	9	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0003	248	6	6	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0004	248	2	0	2	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0005	248	2	0	0	0	0	2	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0006	248	2	2	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0007	248	1	0	1	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	a0008	248	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766