JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SECTM1_chr17_82316024_82338766	0/0	a0009	248	1	0	0	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SEH1L_chr18_12943011_12992531	0/0	a0001	421	309	88	39	141	10	31	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	1/1	a0002	421	74	4	22	26	6	14	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	a0003	421	2	0	1	0	0	1	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	a0004	421	2	0	2	0	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	a0005	421	1	0	0	1	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEL1L2_chr20_13844247_13995614	1/1	a0001	688	268	69	40	122	10	25	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0002	688	35	0	9	18	1	7	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0003	688	7	0	3	0	3	1	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0004	688	4	0	0	4	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0005	688	3	3	0	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0006	688	2	0	0	0	2	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0007	688	2	1	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0008	688	1	0	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0009	688	1	1	0	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	a0010	688	1	0	0	0	0	1	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L3_chr4_25742433_25867988	1/1	a0001	1132	258	57	52	102	9	36	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0002	1132	22	20	2	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0003	1132	8	0	0	8	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0004	1132	5	5	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0005	1132	3	3	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0006	1132	2	0	0	0	0	2	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0007	1132	2	2	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0008	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0009	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0010	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0011	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0012	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0013	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0014	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0015	1132	1	0	0	0	1	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0016	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0017	1132	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0018	1132	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	a0019	1132	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L_chr14_81466547_81538853	1/1	a0001	794	350	84	61	154	12	37	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	a0002	794	3	1	1	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	a0003	794	2	0	1	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	a0004	794	2	2	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	a0005	794	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	a0006	794	1	0	1	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	a0007	794	1	0	0	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SELENBP1_chr1_151359304_151377705	1/1	a0001	472	426	94	82	196	11	41	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0002	472	4	1	2	0	1	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0003	472	3	0	0	0	0	3	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0004	472	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0005	472	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0006	472	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0007	472	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	a0008	472	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705