JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SELENOF_chr1_86857445_86919126	1/1	a0001	95	226	94	32	56	8	34	copy fasta	SELENOF	chr1	86857445	86919126
SELENOH_chr11_57736491_57748550	1/1	a0001	43	365	87	72	156	14	34	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	a0002	43	3	3	0	0	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOI_chr2_26341143_26400885	1/1	a0001	386	334	90	76	134	12	20	copy fasta	SELENOI	chr2	26341143	26400885
SELENOK_chr3_53879417_53896859	1/1	a0001	91	416	91	69	202	12	40	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	a0002	91	6	3	3	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOM_chr22_31099777_31112568	1/1	a0001	47	378	88	78	148	14	48	copy fasta	SELENOM	chr22	31099777	31112568
SELENON_chr1_25795193_25823221	1/1	a0001	126	390	100	71	166	14	37	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	a0002	130	1	0	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	a0003	126	1	0	0	0	0	1	copy fasta	SELENON	chr1	25795193	25823221
SELENOO_chr22_50196011_50222616	0/1	a0001	666	209	47	34	95	7	25	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	1/0	a0002	666	175	20	35	92	10	17	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0003	666	15	12	3	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0004	666	13	0	0	10	0	3	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0005	666	11	11	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0006	666	2	0	0	2	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0007	666	2	0	1	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0008	666	1	0	0	1	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0009	666	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0010	666	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0011	666	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0012	666	1	0	1	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0013	666	1	0	0	0	1	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0014	666	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0015	666	1	0	0	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0016	666	1	0	0	1	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0017	666	1	0	0	1	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	a0018	666	1	0	0	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOP_chr5_42794880_42816892	1/1	a0001	58	388	84	70	176	16	40	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	a0002	58	8	8	0	0	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOS_chr15_101267191_101282485	1/1	a0001	187	433	90	76	203	18	44	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	a0002	187	10	8	2	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	a0003	187	1	1	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	a0004	187	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	a0005	187	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	a0006	187	1	1	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	a0007	187	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOT_chr3_150598321_150635436	1/1	a0001	48	380	94	76	156	12	40	copy fasta	SELENOT	chr3	150598321	150635436
SELENOV_chr19_39510139_39525675	1/1	a0001	272	433	93	78	203	16	41	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	a0002	272	1	0	0	0	0	1	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	a0003	272	1	0	0	1	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	a0004	272	1	1	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOW_chr19_47773703_47789682	1/1	a0001	12	406	98	72	172	16	46	copy fasta	SELENOW	chr19	47773703	47789682
SELE_chr1_169717640_169739079	1/1	a0001	610	314	67	50	147	13	35	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0002	610	65	5	9	45	1	5	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0003	610	23	3	3	12	0	5	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0004	610	19	2	7	5	2	3	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0005	610	5	5	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0006	610	4	4	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0007	610	3	3	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079