JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SELE_chr1_169717640_169739079	0/0	a0008	610	2	1	1	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0009	610	1	1	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0010	610	1	0	0	1	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	a0011	610	1	1	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELL_chr1_169685667_169716620	1/1	a0001	372	288	53	42	145	13	33	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0002	372	90	14	16	50	1	9	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0003	372	32	10	14	0	2	6	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0004	372	11	11	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0005	372	5	5	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0006	372	2	2	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0007	372	1	0	0	1	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0008	372	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0009	372	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	a0010	372	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELPLG_chr12_108616895_108638894	1/0	a0001	412	224	36	52	89	15	31	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0002	402	114	10	15	80	1	8	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/1	a0003	412	85	16	15	50	1	2	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0004	392	30	20	4	0	0	6	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0005	402	9	0	0	9	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0006	402	6	5	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0007	412	3	3	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0008	412	2	2	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0009	412	2	0	0	2	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0010	412	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0011	412	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0012	392	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0013	402	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0014	402	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0015	412	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0016	402	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0017	412	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0018	412	1	0	0	0	1	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0019	412	1	0	0	0	0	1	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	a0020	402	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELP_chr1_169583849_169635124	0/1	a0001	830	133	11	23	80	2	16	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	1/0	a0002	830	45	6	14	9	5	10	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0003	830	33	4	0	26	0	3	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0004	830	30	23	5	0	2	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0005	830	26	21	4	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0006	830	9	1	6	0	1	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0007	830	7	7	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0008	830	7	1	5	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0009	830	6	0	4	0	0	2	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0010	830	5	3	2	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0011	830	3	3	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0012	830	2	0	1	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0013	830	2	2	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0014	830	2	2	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0015	830	2	0	0	2	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0016	830	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124