JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SELP_chr1_169583849_169635124	0/0	a0017	830	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0018	830	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0019	830	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0020	830	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0021	830	1	0	1	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0022	830	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0023	830	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0024	830	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0025	830	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0026	830	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0027	830	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0028	830	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	a0029	830	1	0	1	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SEM1_chr7_96683762_96714846	0/0	a0001	70	354	90	76	130	18	40	copy fasta	SEM1	chr7	96683762	96714846
SEMA3A_chr7_83950777_84199789	1/1	a0001	771	265	71	44	115	6	27	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	a0002	771	8	1	2	5	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	a0003	771	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	a0004	771	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	a0005	771	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3B_chr3_50264147_50282546	1/1	a0001	749	260	66	54	89	16	33	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0002	749	120	19	16	84	0	1	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0003	749	2	2	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0004	749	2	0	2	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0005	749	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0006	749	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0007	749	1	0	0	0	0	1	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0008	749	1	0	0	0	0	1	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0009	749	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	a0010	749	1	1	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3C_chr7_80737538_80924051	1/1	a0001	751	217	66	27	96	6	20	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	a0002	751	16	0	4	10	0	2	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	a0003	751	4	4	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	a0004	751	3	3	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	a0005	751	2	0	0	2	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	a0006	751	1	0	1	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	a0007	751	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3D_chr7_84990553_85192056	1/1	a0001	777	177	53	30	68	6	18	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0002	777	82	26	17	29	4	6	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0003	777	2	0	0	0	0	2	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0004	777	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0005	777	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0006	777	1	0	0	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0007	777	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	a0008	777	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3E_chr7_83358238_83654139	1/1	a0001	775	185	76	37	44	4	22	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	a0002	775	33	5	4	18	0	6	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	a0003	775	7	7	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	a0004	775	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3F_chr3_50150324_50194075	0/1	a0001	785	279	57	49	135	12	25	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	1/0	a0002	785	48	23	16	0	2	6	copy fasta	SEMA3F	chr3	50150324	50194075