JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEMA3F_chr3_50150324_50194075	0/0	a0003	785	9	7	2	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0004	785	2	0	0	2	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0005	785	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0006	785	1	0	1	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0007	785	1	0	0	0	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0008	785	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0009	785	1	0	0	1	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	a0010	785	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3G_chr3_52428035_52450103	1/1	a0001	782	307	84	78	99	12	32	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	a0002	782	2	2	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	a0003	782	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA4A_chr1_156148585_156182744	1/1	a0001	761	349	88	73	129	17	40	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0002	761	13	0	0	13	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0003	761	5	1	4	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0004	761	1	0	0	0	0	1	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0005	761	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0006	761	1	0	0	0	0	1	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0007	761	1	0	0	0	1	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0008	761	1	0	1	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0009	761	1	1	0	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	a0010	761	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4B_chr15_90196330_90234660	0/0	a0001	837	192	64	40	59	7	22	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0002	837	115	3	21	75	2	14	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	1/1	a0003	837	70	4	9	43	6	6	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0004	837	11	0	0	9	0	2	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0005	837	6	0	0	6	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0006	837	6	6	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0007	837	4	4	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0008	837	4	3	1	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0009	837	2	2	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0010	837	2	0	1	0	1	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0011	837	2	0	1	0	0	1	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0012	837	1	0	0	0	0	1	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0013	837	1	0	0	1	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0014	837	1	0	1	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0015	837	1	0	0	1	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0016	837	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	a0017	837	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4C_chr2_96854718_96875080	1/1	a0001	833	317	95	57	124	4	35	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	a0002	833	24	0	0	24	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	a0003	833	7	0	7	0	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	a0004	833	1	0	0	0	0	1	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	a0005	456	1	1	0	0	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4D_chr9_89372235_89503113	1/1	a0001	862	256	75	51	93	8	27	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0002	862	89	4	19	51	4	11	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0003	862	8	0	5	0	1	2	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0004	862	7	7	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0005	862	3	0	1	0	1	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0006	862	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0007	862	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113