JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEMA4D_chr9_89372235_89503113	0/0	a0008	862	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0009	862	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	a0010	862	1	0	0	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4F_chr2_74649247_74688841	1/1	a0001	770	282	88	47	123	3	19	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0002	770	2	0	1	0	1	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0003	770	2	0	2	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0004	770	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0005	770	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0006	770	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0007	770	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0008	599	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0009	770	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0010	687	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0011	770	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0012	770	1	0	0	0	0	1	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	a0013	770	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4G_chr10_100964504_100990616	1/1	a0001	843	351	86	70	137	14	42	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0002	843	3	0	0	3	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0003	843	2	0	0	0	2	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0004	843	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0005	843	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0006	843	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0007	843	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0008	843	1	0	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0009	843	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0010	843	1	0	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0011	843	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0012	843	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0013	843	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0014	843	1	0	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	a0015	843	1	0	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA5A_chr5_9030033_9551075	1/1	a0001	1074	130	65	19	24	7	13	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	a0002	1074	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	a0003	1074	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	a0004	1074	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	a0005	1074	1	0	0	0	1	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5B_chr3_122904082_123032763	0/1	a0001	1151	123	33	36	28	8	17	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	1/0	a0002	1151	95	20	12	47	0	15	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0003	1151	22	3	4	5	2	8	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0004	1151	11	2	7	0	2	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0005	1151	5	5	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0006	1151	4	3	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0007	1151	3	3	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0008	1151	3	3	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0009	1151	3	2	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0010	1151	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0011	1151	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0012	1151	2	1	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0013	1151	2	0	2	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0014	1151	2	0	0	2	0	0	copy fasta	SEMA5B	chr3	122904082	123032763