JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEMA5B_chr3_122904082_123032763	0/0	a0015	1151	2	0	0	2	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0016	1151	1	0	0	1	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0017	1151	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0018	1151	1	0	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0019	1151	1	0	0	1	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0020	1151	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0021	1151	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0022	1151	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0023	1151	1	0	0	0	1	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	a0024	1151	1	0	0	0	1	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA6A_chr5_116438555_116579823	1/1	a0001	1030	282	83	58	99	12	28	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0002	1030	12	0	5	6	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0003	1030	2	0	1	0	1	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0004	1030	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0005	1030	1	0	0	0	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0006	1030	1	0	0	0	1	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0007	1030	1	0	0	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0008	1030	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0009	1030	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	a0010	1030	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6B_chr19_4537593_4564684	0/0	a0000	0	8	0	0	7	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	1/1	a0001	888	404	83	85	173	16	45	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0002	888	11	11	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0003	339	7	2	0	3	0	2	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0004	890	3	3	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0005	126	1	0	0	0	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0006	888	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0007	888	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0008	888	1	0	0	0	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0009	888	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0010	888	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	a0011	888	1	0	1	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6C_chr1_151126707_151151631	0/1	a0001	930	236	47	47	101	8	32	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	1/0	a0002	930	63	20	12	19	7	4	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0003	930	20	13	1	2	1	3	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0004	930	7	7	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0005	930	3	3	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0006	930	1	1	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0007	930	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0008	930	1	1	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0009	930	1	0	1	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0010	930	1	0	0	0	0	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0011	930	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0012	930	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0013	930	1	0	1	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	a0014	930	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6D_chr15_47712505_47779228	0/0	a0001	1073	194	54	30	90	3	17	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	1/1	a0002	1073	145	9	43	64	11	16	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	a0003	1073	42	25	0	11	0	6	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	a0004	1073	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228